Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 HBZP1-201ENST00000354915 429 ntBASIC21.48■■□□□ 1.03
RNF20Q5VTR2 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 AC112907.2-201ENST00000448639 330 ntBASIC21.48■■□□□ 1.03
RNF20Q5VTR2 AC104076.2-201ENST00000448912 469 ntBASIC21.48■■□□□ 1.03
RNF20Q5VTR2 KRT18P38-201ENST00000449496 1282 ntBASIC21.48■■□□□ 1.03
RNF20Q5VTR2 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 ZNF444P1-201ENST00000559497 298 ntBASIC21.48■■□□□ 1.03
RNF20Q5VTR2 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 AC006116.8-202ENST00000587620 1550 ntBASIC21.48■■□□□ 1.03
RNF20Q5VTR2 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF20Q5VTR2 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 AC063952.2-201ENST00000498792 1227 ntBASIC21.47■■□□□ 1.03
RNF20Q5VTR2 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.47■■□□□ 1.03
RNF20Q5VTR2 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.47■■□□□ 1.03
RNF20Q5VTR2 AC012317.2-201ENST00000623305 2251 ntBASIC21.46■■□□□ 1.03
RNF20Q5VTR2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 MIR662-201ENST00000384847 95 ntBASIC21.46■■□□□ 1.03
RNF20Q5VTR2 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 AP003733.1-201ENST00000491725 852 ntBASIC21.46■■□□□ 1.03
RNF20Q5VTR2 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 LINC01238-205ENST00000567549 1107 ntBASIC21.46■■□□□ 1.03
RNF20Q5VTR2 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.46■■□□□ 1.03
RNF20Q5VTR2 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms