Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTCHD3Q3KNS1 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTCHD3Q3KNS1 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 AC024563.2-201ENST00000603282 481 ntBASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.58■□□□□ 0.4
PTCHD3Q3KNS1 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 HLA-F-220ENST00000434407 884 ntBASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 LINC00602-201ENST00000629776 2065 ntBASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTCHD3Q3KNS1 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 LINC00167-201ENST00000530583 1419 ntBASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 AC113404.2-201ENST00000507884 177 ntBASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 KRT89P-201ENST00000620027 1478 ntBASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTCHD3Q3KNS1 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD3Q3KNS1 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms