Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
IRX4P78413 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.71■□□□□ 0.59
IRX4P78413 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.71■□□□□ 0.59
IRX4P78413 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.71■□□□□ 0.59
IRX4P78413 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
IRX4P78413 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 EMBP1-201ENST00000458200 901 ntBASIC18.71■□□□□ 0.59
IRX4P78413 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.71■□□□□ 0.59
IRX4P78413 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.71■□□□□ 0.59
IRX4P78413 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.71■□□□□ 0.59
IRX4P78413 IFNL4P1-201ENST00000607083 540 ntBASIC18.71■□□□□ 0.59
IRX4P78413 AC024243.1-201ENST00000609234 778 ntBASIC18.71■□□□□ 0.59
IRX4P78413 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
IRX4P78413 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.71■□□□□ 0.59
IRX4P78413 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
IRX4P78413 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
IRX4P78413 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.71■□□□□ 0.59
IRX4P78413 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.71■□□□□ 0.59
IRX4P78413 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
IRX4P78413 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
IRX4P78413 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
IRX4P78413 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
IRX4P78413 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.7■□□□□ 0.58
IRX4P78413 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
IRX4P78413 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.7■□□□□ 0.58
IRX4P78413 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.7■□□□□ 0.58
IRX4P78413 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
IRX4P78413 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.7■□□□□ 0.58
IRX4P78413 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.7■□□□□ 0.58
IRX4P78413 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.7■□□□□ 0.58
IRX4P78413 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
IRX4P78413 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
IRX4P78413 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
IRX4P78413 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 KRT8P26-201ENST00000534154 1276 ntBASIC18.69■□□□□ 0.58
IRX4P78413 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.69■□□□□ 0.58
IRX4P78413 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
IRX4P78413 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 AC006538.3-201ENST00000612495 578 ntBASIC18.69■□□□□ 0.58
IRX4P78413 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 AC023511.2-201ENST00000618803 211 ntBASIC18.69■□□□□ 0.58
IRX4P78413 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
IRX4P78413 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.69■□□□□ 0.58
IRX4P78413 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.69■□□□□ 0.58
IRX4P78413 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
IRX4P78413 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.69■□□□□ 0.58
IRX4P78413 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
IRX4P78413 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
IRX4P78413 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
IRX4P78413 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
IRX4P78413 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.68■□□□□ 0.58
IRX4P78413 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms