Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CLRN1P58418 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CLRN1P58418 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CLRN1P58418 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.08■□□□□ 0.17
CLRN1P58418 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.08■□□□□ 0.17
CLRN1P58418 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CLRN1P58418 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.08■□□□□ 0.16
CLRN1P58418 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 HOMER2P1-201ENST00000455653 964 ntBASIC16.08■□□□□ 0.16
CLRN1P58418 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.08■□□□□ 0.16
CLRN1P58418 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.08■□□□□ 0.16
CLRN1P58418 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.08■□□□□ 0.16
CLRN1P58418 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.08■□□□□ 0.16
CLRN1P58418 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
CLRN1P58418 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
CLRN1P58418 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
CLRN1P58418 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.08■□□□□ 0.16
CLRN1P58418 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.08■□□□□ 0.16
CLRN1P58418 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.08■□□□□ 0.16
CLRN1P58418 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
CLRN1P58418 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.08■□□□□ 0.16
CLRN1P58418 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.08■□□□□ 0.16
CLRN1P58418 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.08■□□□□ 0.16
CLRN1P58418 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
CLRN1P58418 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CLRN1P58418 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
CLRN1P58418 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.07■□□□□ 0.16
CLRN1P58418 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CLRN1P58418 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CLRN1P58418 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CLRN1P58418 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.07■□□□□ 0.16
CLRN1P58418 AL359075.1-203ENST00000462729 1002 ntBASIC16.07■□□□□ 0.16
CLRN1P58418 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.07■□□□□ 0.16
CLRN1P58418 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.07■□□□□ 0.16
CLRN1P58418 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.07■□□□□ 0.16
CLRN1P58418 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.07■□□□□ 0.16
CLRN1P58418 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.07■□□□□ 0.16
CLRN1P58418 AC079602.3-201ENST00000623931 403 ntBASIC16.07■□□□□ 0.16
CLRN1P58418 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.07■□□□□ 0.16
CLRN1P58418 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 LINC00602-201ENST00000629776 2065 ntBASIC16.07■□□□□ 0.16
CLRN1P58418 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CLRN1P58418 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CLRN1P58418 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CLRN1P58418 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.06■□□□□ 0.16
CLRN1P58418 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.06■□□□□ 0.16
CLRN1P58418 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.06■□□□□ 0.16
CLRN1P58418 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.06■□□□□ 0.16
CLRN1P58418 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CLRN1P58418 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
CLRN1P58418 AC022898.2-201ENST00000616822 1312 ntBASIC16.06■□□□□ 0.16
CLRN1P58418 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CLRN1P58418 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms