Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A4P53420 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.1■□□□□ 0.65
COL4A4P53420 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A4P53420 AL513190.1-201ENST00000621254 727 ntBASIC19.1■□□□□ 0.65
COL4A4P53420 AC092865.6-201ENST00000642101 219 ntBASIC19.1■□□□□ 0.65
COL4A4P53420 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A4P53420 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A4P53420 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
COL4A4P53420 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A4P53420 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A4P53420 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A4P53420 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
COL4A4P53420 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A4P53420 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A4P53420 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A4P53420 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A4P53420 AL645939.2-201ENST00000427340 991 ntBASIC19.09■□□□□ 0.65
COL4A4P53420 AC007967.3-201ENST00000434308 558 ntBASIC19.09■□□□□ 0.65
COL4A4P53420 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
COL4A4P53420 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A4P53420 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.09■□□□□ 0.65
COL4A4P53420 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A4P53420 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A4P53420 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A4P53420 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A4P53420 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COL4A4P53420 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COL4A4P53420 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A4P53420 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A4P53420 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COL4A4P53420 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A4P53420 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A4P53420 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.08■□□□□ 0.65
COL4A4P53420 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.08■□□□□ 0.65
COL4A4P53420 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A4P53420 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
COL4A4P53420 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A4P53420 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
COL4A4P53420 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.08■□□□□ 0.65
COL4A4P53420 ELL2P1-201ENST00000413990 1906 ntBASIC19.08■□□□□ 0.65
COL4A4P53420 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
COL4A4P53420 AC093010.1-201ENST00000473625 1624 ntBASIC19.08■□□□□ 0.65
COL4A4P53420 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.08■□□□□ 0.65
COL4A4P53420 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A4P53420 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
COL4A4P53420 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A4P53420 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A4P53420 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.08■□□□□ 0.65
COL4A4P53420 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.08■□□□□ 0.64
COL4A4P53420 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.08■□□□□ 0.64
COL4A4P53420 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.08■□□□□ 0.64
COL4A4P53420 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.08■□□□□ 0.64
COL4A4P53420 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.08■□□□□ 0.64
COL4A4P53420 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.08■□□□□ 0.64
COL4A4P53420 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A4P53420 ESPNP-201ENST00000270691 2015 ntBASIC19.08■□□□□ 0.64
COL4A4P53420 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.08■□□□□ 0.64
COL4A4P53420 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.07■□□□□ 0.64
COL4A4P53420 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A4P53420 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A4P53420 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A4P53420 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
COL4A4P53420 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A4P53420 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A4P53420 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A4P53420 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A4P53420 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.07■□□□□ 0.64
COL4A4P53420 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A4P53420 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A4P53420 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.07■□□□□ 0.64
COL4A4P53420 AC112698.1-201ENST00000510299 916 ntBASIC19.07■□□□□ 0.64
COL4A4P53420 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A4P53420 SNHG9-202ENST00000564014 471 ntBASIC19.07■□□□□ 0.64
COL4A4P53420 AC239800.4-201ENST00000603712 296 ntBASIC19.07■□□□□ 0.64
COL4A4P53420 PGM5P2-202ENST00000637225 1043 ntBASIC19.07■□□□□ 0.64
COL4A4P53420 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A4P53420 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.06■□□□□ 0.64
COL4A4P53420 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL4A4P53420 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
COL4A4P53420 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
COL4A4P53420 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms