Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH6P52701 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
MSH6P52701 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
MSH6P52701 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
MSH6P52701 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC24.72■■□□□ 1.55
MSH6P52701 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC24.72■■□□□ 1.55
MSH6P52701 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC24.72■■□□□ 1.55
MSH6P52701 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC24.72■■□□□ 1.55
MSH6P52701 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC24.72■■□□□ 1.55
MSH6P52701 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
MSH6P52701 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
MSH6P52701 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC24.72■■□□□ 1.55
MSH6P52701 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH6P52701 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH6P52701 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC24.72■■□□□ 1.55
MSH6P52701 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH6P52701 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH6P52701 AC025580.3-201ENST00000617932 1424 ntBASIC24.72■■□□□ 1.55
MSH6P52701 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH6P52701 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH6P52701 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
MSH6P52701 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
MSH6P52701 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
MSH6P52701 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC24.71■■□□□ 1.55
MSH6P52701 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
MSH6P52701 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC24.71■■□□□ 1.55
MSH6P52701 AC093214.1-201ENST00000511688 1107 ntBASIC24.71■■□□□ 1.55
MSH6P52701 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC24.71■■□□□ 1.55
MSH6P52701 AC093520.2-201ENST00000561830 333 ntBASIC24.71■■□□□ 1.55
MSH6P52701 AC015911.4-201ENST00000588022 1070 ntBASIC24.71■■□□□ 1.55
MSH6P52701 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC24.71■■□□□ 1.55
MSH6P52701 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC24.71■■□□□ 1.55
MSH6P52701 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC24.71■■□□□ 1.55
MSH6P52701 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
MSH6P52701 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
MSH6P52701 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
MSH6P52701 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC24.71■■□□□ 1.55
MSH6P52701 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
MSH6P52701 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
MSH6P52701 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
MSH6P52701 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
MSH6P52701 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC24.7■■□□□ 1.55
MSH6P52701 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC24.7■■□□□ 1.55
MSH6P52701 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
MSH6P52701 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.55
MSH6P52701 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC24.7■■□□□ 1.55
MSH6P52701 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
MSH6P52701 AC103564.2-201ENST00000432853 1299 ntBASIC24.7■■□□□ 1.55
MSH6P52701 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
MSH6P52701 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.55
MSH6P52701 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
MSH6P52701 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC24.7■■□□□ 1.54
MSH6P52701 AC148477.5-201ENST00000625164 1645 ntBASIC24.7■■□□□ 1.54
MSH6P52701 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC24.7■■□□□ 1.54
MSH6P52701 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
MSH6P52701 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
MSH6P52701 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC24.7■■□□□ 1.54
MSH6P52701 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
MSH6P52701 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC24.7■■□□□ 1.54
MSH6P52701 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
MSH6P52701 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
MSH6P52701 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
MSH6P52701 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
MSH6P52701 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC24.69■■□□□ 1.54
MSH6P52701 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC24.69■■□□□ 1.54
MSH6P52701 NKTR-203ENST00000442970 646 ntTSL 2 BASIC24.69■■□□□ 1.54
MSH6P52701 POLD4-211ENST00000539074 714 ntTSL 3 BASIC24.69■■□□□ 1.54
MSH6P52701 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
MSH6P52701 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC24.69■■□□□ 1.54
MSH6P52701 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC24.69■■□□□ 1.54
MSH6P52701 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
MSH6P52701 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC24.69■■□□□ 1.54
MSH6P52701 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC24.69■■□□□ 1.54
MSH6P52701 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
MSH6P52701 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC24.69■■□□□ 1.54
MSH6P52701 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH6P52701 SNCG-201ENST00000348795 684 ntTSL 2 BASIC24.68■■□□□ 1.54
MSH6P52701 GSAP-205ENST00000430584 600 ntTSL 5 BASIC24.68■■□□□ 1.54
MSH6P52701 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
MSH6P52701 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
MSH6P52701 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
MSH6P52701 SLBP-205ENST00000488267 987 ntTSL 2 BASIC24.68■■□□□ 1.54
MSH6P52701 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC24.68■■□□□ 1.54
MSH6P52701 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC24.68■■□□□ 1.54
MSH6P52701 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
MSH6P52701 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
MSH6P52701 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
MSH6P52701 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
MSH6P52701 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
MSH6P52701 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms