Protein–RNA interactions for Protein: P51532

SMARCA4, Transcription activator BRG1, humanhuman

Predictions only

Length 1,647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4P51532 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
SMARCA4P51532 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
SMARCA4P51532 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SMARCA4P51532 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC31.92■■■□□ 2.7
SMARCA4P51532 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SMARCA4P51532 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SMARCA4P51532 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SMARCA4P51532 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC31.92■■■□□ 2.7
SMARCA4P51532 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
SMARCA4P51532 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
SMARCA4P51532 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC31.92■■■□□ 2.7
SMARCA4P51532 AC023141.5-201ENST00000458585 616 ntBASIC31.92■■■□□ 2.7
SMARCA4P51532 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC31.92■■■□□ 2.7
SMARCA4P51532 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC31.92■■■□□ 2.7
SMARCA4P51532 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SMARCA4P51532 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SMARCA4P51532 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
SMARCA4P51532 CLDN5-201ENST00000403084 2357 ntBASIC31.91■■■□□ 2.7
SMARCA4P51532 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SMARCA4P51532 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SMARCA4P51532 CCND1-203ENST00000536559 553 ntTSL 3 BASIC31.91■■■□□ 2.7
SMARCA4P51532 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC31.91■■■□□ 2.7
SMARCA4P51532 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
SMARCA4P51532 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC31.91■■■□□ 2.7
SMARCA4P51532 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SMARCA4P51532 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SMARCA4P51532 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SMARCA4P51532 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SMARCA4P51532 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
SMARCA4P51532 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SMARCA4P51532 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC31.9■■■□□ 2.7
SMARCA4P51532 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
SMARCA4P51532 SMN2-210ENST00000511812 867 ntTSL 2 BASIC31.9■■■□□ 2.7
SMARCA4P51532 PRR29-209ENST00000582540 967 ntTSL 2 BASIC31.9■■■□□ 2.7
SMARCA4P51532 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC31.9■■■□□ 2.7
SMARCA4P51532 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
SMARCA4P51532 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
SMARCA4P51532 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SMARCA4P51532 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SMARCA4P51532 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SMARCA4P51532 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC31.9■■■□□ 2.7
SMARCA4P51532 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC31.9■■■□□ 2.7
SMARCA4P51532 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC31.89■■■□□ 2.7
SMARCA4P51532 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
SMARCA4P51532 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC31.89■■■□□ 2.7
SMARCA4P51532 CCDC74BP1-201ENST00000508880 1123 ntBASIC31.89■■■□□ 2.7
SMARCA4P51532 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC31.89■■■□□ 2.7
SMARCA4P51532 AL353135.1-201ENST00000606729 504 ntBASIC31.89■■■□□ 2.7
SMARCA4P51532 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SMARCA4P51532 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SMARCA4P51532 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SMARCA4P51532 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC31.89■■■□□ 2.7
SMARCA4P51532 AC005332.7-201ENST00000614046 2005 ntBASIC31.89■■■□□ 2.7
SMARCA4P51532 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC31.89■■■□□ 2.7
SMARCA4P51532 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC31.89■■■□□ 2.7
SMARCA4P51532 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
SMARCA4P51532 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
SMARCA4P51532 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
SMARCA4P51532 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC31.89■■■□□ 2.7
SMARCA4P51532 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC31.89■■■□□ 2.7
SMARCA4P51532 GREM1-201ENST00000560677 623 ntTSL 4 BASIC31.89■■■□□ 2.7
SMARCA4P51532 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC31.89■■■□□ 2.7
SMARCA4P51532 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC31.89■■■□□ 2.7
SMARCA4P51532 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
SMARCA4P51532 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
SMARCA4P51532 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC31.88■■■□□ 2.69
SMARCA4P51532 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC31.88■■■□□ 2.69
SMARCA4P51532 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
SMARCA4P51532 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SMARCA4P51532 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC31.88■■■□□ 2.69
SMARCA4P51532 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC31.88■■■□□ 2.69
SMARCA4P51532 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC31.88■■■□□ 2.69
SMARCA4P51532 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
SMARCA4P51532 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
SMARCA4P51532 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC31.88■■■□□ 2.69
SMARCA4P51532 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
SMARCA4P51532 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SMARCA4P51532 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SMARCA4P51532 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SMARCA4P51532 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SMARCA4P51532 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC31.87■■■□□ 2.69
SMARCA4P51532 PAWRP1-201ENST00000451083 565 ntBASIC31.87■■■□□ 2.69
SMARCA4P51532 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC31.87■■■□□ 2.69
SMARCA4P51532 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SMARCA4P51532 AC009093.7-201ENST00000623853 1223 ntBASIC31.87■■■□□ 2.69
SMARCA4P51532 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
SMARCA4P51532 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SMARCA4P51532 AC018445.3-201ENST00000624177 1945 ntBASIC31.87■■■□□ 2.69
SMARCA4P51532 HLA-J-203ENST00000494367 1087 ntBASIC31.86■■■□□ 2.69
SMARCA4P51532 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC31.86■■■□□ 2.69
SMARCA4P51532 PTGES2-AS1-201ENST00000443493 2100 ntBASIC31.86■■■□□ 2.69
SMARCA4P51532 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC31.86■■■□□ 2.69
SMARCA4P51532 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
SMARCA4P51532 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
SMARCA4P51532 AFG3L1P-217ENST00000557444 2447 ntBASIC31.86■■■□□ 2.69
SMARCA4P51532 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC31.86■■■□□ 2.69
SMARCA4P51532 SIGLEC30P-201ENST00000455569 941 ntBASIC31.86■■■□□ 2.69
SMARCA4P51532 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC31.86■■■□□ 2.69
SMARCA4P51532 STK25P1-201ENST00000585406 838 ntBASIC31.86■■■□□ 2.69
SMARCA4P51532 PHGDH-209ENST00000641074 1780 ntBASIC31.85■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms