Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HADHAP40939 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
HADHAP40939 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.21■□□□□ 0.51
HADHAP40939 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.21■□□□□ 0.51
HADHAP40939 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HADHAP40939 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.21■□□□□ 0.51
HADHAP40939 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HADHAP40939 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HADHAP40939 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HADHAP40939 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
HADHAP40939 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 AC093010.1-201ENST00000473625 1624 ntBASIC18.2■□□□□ 0.5
HADHAP40939 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HADHAP40939 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
HADHAP40939 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.2■□□□□ 0.5
HADHAP40939 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
HADHAP40939 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.2■□□□□ 0.5
HADHAP40939 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.2■□□□□ 0.5
HADHAP40939 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HADHAP40939 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.2■□□□□ 0.5
HADHAP40939 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.2■□□□□ 0.5
HADHAP40939 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.2■□□□□ 0.5
HADHAP40939 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 AL391807.1-203ENST00000604392 2365 ntBASIC18.2■□□□□ 0.5
HADHAP40939 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HADHAP40939 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HADHAP40939 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HADHAP40939 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HADHAP40939 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HADHAP40939 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HADHAP40939 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.19■□□□□ 0.5
HADHAP40939 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HADHAP40939 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 KRT18P55-202ENST00000578578 1546 ntBASIC18.19■□□□□ 0.5
HADHAP40939 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.19■□□□□ 0.5
HADHAP40939 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.19■□□□□ 0.5
HADHAP40939 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.19■□□□□ 0.5
HADHAP40939 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 AC063952.2-201ENST00000498792 1227 ntBASIC18.19■□□□□ 0.5
HADHAP40939 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.19■□□□□ 0.5
HADHAP40939 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.19■□□□□ 0.5
HADHAP40939 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HADHAP40939 AL049597.2-201ENST00000565575 961 ntBASIC18.19■□□□□ 0.5
HADHAP40939 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
HADHAP40939 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.19■□□□□ 0.5
HADHAP40939 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.19■□□□□ 0.5
HADHAP40939 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.19■□□□□ 0.5
HADHAP40939 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HADHAP40939 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 KRT89P-201ENST00000620027 1478 ntBASIC18.19■□□□□ 0.5
HADHAP40939 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HADHAP40939 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HADHAP40939 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HADHAP40939 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.18■□□□□ 0.5
HADHAP40939 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.18■□□□□ 0.5
HADHAP40939 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.18■□□□□ 0.5
HADHAP40939 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.18■□□□□ 0.5
HADHAP40939 AC024563.2-201ENST00000603282 481 ntBASIC18.18■□□□□ 0.5
HADHAP40939 AC079602.3-201ENST00000623931 403 ntBASIC18.18■□□□□ 0.5
HADHAP40939 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.18■□□□□ 0.5
HADHAP40939 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms