Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CUX1P39880 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC29.88■■■□□ 2.37
CUX1P39880 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC29.88■■■□□ 2.37
CUX1P39880 TSEN15P1-201ENST00000423257 515 ntBASIC29.88■■■□□ 2.37
CUX1P39880 RHOQP3-201ENST00000437982 621 ntBASIC29.88■■■□□ 2.37
CUX1P39880 DUTP2-201ENST00000519164 463 ntBASIC29.88■■■□□ 2.37
CUX1P39880 AC106028.4-201ENST00000614509 607 ntBASIC29.88■■■□□ 2.37
CUX1P39880 CITED2-204ENST00000618718 901 ntTSL 2 BASIC29.88■■■□□ 2.37
CUX1P39880 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CUX1P39880 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CUX1P39880 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
CUX1P39880 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CUX1P39880 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX1P39880 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX1P39880 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC29.87■■■□□ 2.37
CUX1P39880 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC29.87■■■□□ 2.37
CUX1P39880 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC29.87■■■□□ 2.37
CUX1P39880 AL031598.1-201ENST00000561511 1773 ntBASIC29.87■■■□□ 2.37
CUX1P39880 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
CUX1P39880 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX1P39880 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
CUX1P39880 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX1P39880 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CUX1P39880 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
CUX1P39880 MRPL20P1-201ENST00000400819 433 ntBASIC29.86■■■□□ 2.37
CUX1P39880 NKTR-203ENST00000442970 646 ntTSL 2 BASIC29.86■■■□□ 2.37
CUX1P39880 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC29.86■■■□□ 2.37
CUX1P39880 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CUX1P39880 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CUX1P39880 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC29.86■■■□□ 2.37
CUX1P39880 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC29.86■■■□□ 2.37
CUX1P39880 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CUX1P39880 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC29.86■■■□□ 2.37
CUX1P39880 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CUX1P39880 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC29.86■■■□□ 2.37
CUX1P39880 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC29.86■■■□□ 2.37
CUX1P39880 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CUX1P39880 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
CUX1P39880 AC116562.4-201ENST00000641316 2276 ntBASIC29.86■■■□□ 2.37
CUX1P39880 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC29.86■■■□□ 2.37
CUX1P39880 FAM8A3P-201ENST00000427218 844 ntBASIC29.86■■■□□ 2.37
CUX1P39880 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC29.86■■■□□ 2.37
CUX1P39880 CEND1P1-201ENST00000451006 455 ntBASIC29.86■■■□□ 2.37
CUX1P39880 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC29.86■■■□□ 2.37
CUX1P39880 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC29.86■■■□□ 2.37
CUX1P39880 RNF34-208ENST00000555076 593 ntTSL 3 BASIC29.86■■■□□ 2.37
CUX1P39880 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC29.86■■■□□ 2.37
CUX1P39880 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC29.86■■■□□ 2.37
CUX1P39880 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC29.86■■■□□ 2.37
CUX1P39880 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CUX1P39880 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CUX1P39880 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC29.85■■■□□ 2.37
CUX1P39880 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC29.85■■■□□ 2.37
CUX1P39880 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC29.85■■■□□ 2.37
CUX1P39880 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
CUX1P39880 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC29.85■■■□□ 2.37
CUX1P39880 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CUX1P39880 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
CUX1P39880 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC29.85■■■□□ 2.37
CUX1P39880 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC29.85■■■□□ 2.37
CUX1P39880 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC29.85■■■□□ 2.37
CUX1P39880 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC29.85■■■□□ 2.37
CUX1P39880 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC29.85■■■□□ 2.37
CUX1P39880 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
CUX1P39880 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC29.84■■■□□ 2.37
CUX1P39880 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC29.84■■■□□ 2.37
CUX1P39880 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CUX1P39880 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC29.84■■■□□ 2.37
CUX1P39880 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC29.84■■■□□ 2.37
CUX1P39880 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC29.84■■■□□ 2.37
CUX1P39880 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC29.84■■■□□ 2.37
CUX1P39880 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC29.84■■■□□ 2.37
CUX1P39880 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
CUX1P39880 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CUX1P39880 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC29.83■■■□□ 2.37
CUX1P39880 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX1P39880 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX1P39880 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX1P39880 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC29.83■■■□□ 2.37
CUX1P39880 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX1P39880 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX1P39880 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC29.83■■■□□ 2.37
CUX1P39880 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC29.83■■■□□ 2.37
CUX1P39880 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC29.83■■■□□ 2.37
CUX1P39880 AC091812.2-201ENST00000619081 385 ntBASIC29.83■■■□□ 2.37
CUX1P39880 AC004877.2-201ENST00000623941 599 ntBASIC29.83■■■□□ 2.37
CUX1P39880 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC29.83■■■□□ 2.37
CUX1P39880 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX1P39880 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
CUX1P39880 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
CUX1P39880 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC29.82■■■□□ 2.36
CUX1P39880 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC29.82■■■□□ 2.36
CUX1P39880 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC29.82■■■□□ 2.36
CUX1P39880 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC29.82■■■□□ 2.36
CUX1P39880 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
CUX1P39880 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC29.82■■■□□ 2.36
CUX1P39880 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC29.82■■■□□ 2.36
CUX1P39880 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC29.82■■■□□ 2.36
CUX1P39880 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
CUX1P39880 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms