Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.07■□□□□ 0.48
PTPN4P29074 KRT8P41-201ENST00000533985 1514 ntBASIC18.07■□□□□ 0.48
PTPN4P29074 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.07■□□□□ 0.48
PTPN4P29074 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.06■□□□□ 0.48
PTPN4P29074 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.06■□□□□ 0.48
PTPN4P29074 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.06■□□□□ 0.48
PTPN4P29074 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.06■□□□□ 0.48
PTPN4P29074 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
PTPN4P29074 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.06■□□□□ 0.48
PTPN4P29074 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.06■□□□□ 0.48
PTPN4P29074 FAM8A6P-201ENST00000407496 1135 ntBASIC18.06■□□□□ 0.48
PTPN4P29074 TSPY21P-201ENST00000433481 731 ntBASIC18.06■□□□□ 0.48
PTPN4P29074 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.06■□□□□ 0.48
PTPN4P29074 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.06■□□□□ 0.48
PTPN4P29074 YBX1P2-201ENST00000489612 999 ntBASIC18.06■□□□□ 0.48
PTPN4P29074 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
PTPN4P29074 AC141257.4-201ENST00000634557 245 ntBASIC18.06■□□□□ 0.48
PTPN4P29074 AC136944.6-201ENST00000634818 245 ntBASIC18.06■□□□□ 0.48
PTPN4P29074 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
PTPN4P29074 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.06■□□□□ 0.48
PTPN4P29074 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.06■□□□□ 0.48
PTPN4P29074 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.06■□□□□ 0.48
PTPN4P29074 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.06■□□□□ 0.48
PTPN4P29074 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTPN4P29074 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
PTPN4P29074 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN4P29074 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
PTPN4P29074 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
PTPN4P29074 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN4P29074 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.05■□□□□ 0.48
PTPN4P29074 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.05■□□□□ 0.48
PTPN4P29074 TSPY5P-201ENST00000426936 936 ntBASIC18.05■□□□□ 0.48
PTPN4P29074 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN4P29074 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN4P29074 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.05■□□□□ 0.48
PTPN4P29074 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.05■□□□□ 0.48
PTPN4P29074 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.05■□□□□ 0.48
PTPN4P29074 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.05■□□□□ 0.48
PTPN4P29074 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
PTPN4P29074 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
PTPN4P29074 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 AL118508.1-201ENST00000613502 2345 ntBASIC18.05■□□□□ 0.48
PTPN4P29074 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
PTPN4P29074 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTPN4P29074 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
PTPN4P29074 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.05■□□□□ 0.48
PTPN4P29074 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PTPN4P29074 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.04■□□□□ 0.48
PTPN4P29074 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PTPN4P29074 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.04■□□□□ 0.48
PTPN4P29074 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.04■□□□□ 0.48
PTPN4P29074 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
PTPN4P29074 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.04■□□□□ 0.48
PTPN4P29074 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.04■□□□□ 0.48
PTPN4P29074 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.04■□□□□ 0.48
PTPN4P29074 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN4P29074 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
PTPN4P29074 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
PTPN4P29074 AL031432.5-201ENST00000641059 760 ntBASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms