Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SMARCA1P28370 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.59■□□□□ 0.89
SMARCA1P28370 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
SMARCA1P28370 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.59■□□□□ 0.89
SMARCA1P28370 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.59■□□□□ 0.89
SMARCA1P28370 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.59■□□□□ 0.89
SMARCA1P28370 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.59■□□□□ 0.89
SMARCA1P28370 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
SMARCA1P28370 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.59■□□□□ 0.89
SMARCA1P28370 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMARCA1P28370 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SMARCA1P28370 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.58■□□□□ 0.89
SMARCA1P28370 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMARCA1P28370 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.58■□□□□ 0.89
SMARCA1P28370 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMARCA1P28370 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMARCA1P28370 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMARCA1P28370 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SMARCA1P28370 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMARCA1P28370 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.58■□□□□ 0.89
SMARCA1P28370 KRT126P-201ENST00000549467 1181 ntBASIC20.58■□□□□ 0.89
SMARCA1P28370 AC091304.2-201ENST00000564639 760 ntBASIC20.58■□□□□ 0.89
SMARCA1P28370 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.58■□□□□ 0.89
SMARCA1P28370 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SMARCA1P28370 AC012313.10-201ENST00000623509 926 ntBASIC20.58■□□□□ 0.89
SMARCA1P28370 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SMARCA1P28370 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
SMARCA1P28370 NOC2LP1-202ENST00000452600 2235 ntBASIC20.58■□□□□ 0.88
SMARCA1P28370 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMARCA1P28370 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
SMARCA1P28370 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMARCA1P28370 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.58■□□□□ 0.88
SMARCA1P28370 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SMARCA1P28370 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.57■□□□□ 0.88
SMARCA1P28370 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 NEFHP1-201ENST00000412845 2629 ntBASIC20.57■□□□□ 0.88
SMARCA1P28370 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.57■□□□□ 0.88
SMARCA1P28370 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.57■□□□□ 0.88
SMARCA1P28370 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.57■□□□□ 0.88
SMARCA1P28370 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.57■□□□□ 0.88
SMARCA1P28370 AC096582.2-201ENST00000510860 516 ntBASIC20.57■□□□□ 0.88
SMARCA1P28370 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.57■□□□□ 0.88
SMARCA1P28370 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.57■□□□□ 0.88
SMARCA1P28370 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.57■□□□□ 0.88
SMARCA1P28370 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.57■□□□□ 0.88
SMARCA1P28370 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.57■□□□□ 0.88
SMARCA1P28370 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.57■□□□□ 0.88
SMARCA1P28370 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
SMARCA1P28370 BX276092.7-203ENST00000637198 1536 ntBASIC20.57■□□□□ 0.88
SMARCA1P28370 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMARCA1P28370 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SMARCA1P28370 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 AC009949.1-201ENST00000623048 1830 ntBASIC20.56■□□□□ 0.88
SMARCA1P28370 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.56■□□□□ 0.88
SMARCA1P28370 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.56■□□□□ 0.88
SMARCA1P28370 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.56■□□□□ 0.88
SMARCA1P28370 AC103564.2-201ENST00000432853 1299 ntBASIC20.56■□□□□ 0.88
SMARCA1P28370 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.56■□□□□ 0.88
SMARCA1P28370 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.56■□□□□ 0.88
SMARCA1P28370 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms