Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
COL6A1P12109 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A1P12109 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
COL6A1P12109 AC007952.6-201ENST00000573168 2673 ntBASIC19.76■□□□□ 0.75
COL6A1P12109 AC003957.1-201ENST00000625108 2673 ntBASIC19.76■□□□□ 0.75
COL6A1P12109 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
COL6A1P12109 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
COL6A1P12109 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A1P12109 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A1P12109 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A1P12109 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A1P12109 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A1P12109 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL6A1P12109 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A1P12109 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A1P12109 IGLL3P-201ENST00000412472 434 ntBASIC19.75■□□□□ 0.75
COL6A1P12109 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A1P12109 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
COL6A1P12109 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A1P12109 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A1P12109 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL6A1P12109 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
COL6A1P12109 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A1P12109 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.74■□□□□ 0.75
COL6A1P12109 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A1P12109 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A1P12109 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A1P12109 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.74■□□□□ 0.75
COL6A1P12109 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
COL6A1P12109 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.74■□□□□ 0.75
COL6A1P12109 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL6A1P12109 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.74■□□□□ 0.75
COL6A1P12109 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.74■□□□□ 0.75
COL6A1P12109 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.74■□□□□ 0.75
COL6A1P12109 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.74■□□□□ 0.75
COL6A1P12109 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A1P12109 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A1P12109 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
COL6A1P12109 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.73■□□□□ 0.75
COL6A1P12109 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
COL6A1P12109 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.73■□□□□ 0.75
COL6A1P12109 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.73■□□□□ 0.75
COL6A1P12109 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.73■□□□□ 0.75
COL6A1P12109 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
COL6A1P12109 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A1P12109 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.73■□□□□ 0.75
COL6A1P12109 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
COL6A1P12109 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A1P12109 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A1P12109 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.73■□□□□ 0.75
COL6A1P12109 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
COL6A1P12109 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A1P12109 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.73■□□□□ 0.75
COL6A1P12109 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A1P12109 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
COL6A1P12109 AC004790.2-201ENST00000623588 572 ntBASIC19.73■□□□□ 0.75
COL6A1P12109 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.73■□□□□ 0.75
COL6A1P12109 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A1P12109 AC010460.3-201ENST00000511359 1579 ntBASIC19.73■□□□□ 0.75
COL6A1P12109 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A1P12109 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.73■□□□□ 0.75
COL6A1P12109 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.73■□□□□ 0.75
COL6A1P12109 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
COL6A1P12109 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
COL6A1P12109 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
COL6A1P12109 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 ACTG1P14-201ENST00000446382 1122 ntBASIC19.72■□□□□ 0.75
COL6A1P12109 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 RPS15P9-201ENST00000494093 319 ntBASIC19.72■□□□□ 0.75
COL6A1P12109 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.72■□□□□ 0.75
COL6A1P12109 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.72■□□□□ 0.75
COL6A1P12109 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.72■□□□□ 0.75
COL6A1P12109 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.72■□□□□ 0.75
COL6A1P12109 AC093512.1-201ENST00000617969 520 ntBASIC19.72■□□□□ 0.75
COL6A1P12109 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.72■□□□□ 0.75
COL6A1P12109 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A1P12109 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms