Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HDAC3O15379 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HDAC3O15379 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC3O15379 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC3O15379 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HDAC3O15379 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC3O15379 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
HDAC3O15379 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC3O15379 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.51■□□□□ 0.39
HDAC3O15379 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.51■□□□□ 0.39
HDAC3O15379 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC3O15379 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 FAM197Y4-202ENST00000622692 608 ntBASIC17.51■□□□□ 0.39
HDAC3O15379 AC112497.1-201ENST00000624824 639 ntBASIC17.51■□□□□ 0.39
HDAC3O15379 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC3O15379 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC3O15379 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.51■□□□□ 0.39
HDAC3O15379 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.51■□□□□ 0.39
HDAC3O15379 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HDAC3O15379 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HDAC3O15379 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
HDAC3O15379 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
HDAC3O15379 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 AC022898.2-201ENST00000616822 1312 ntBASIC17.5■□□□□ 0.39
HDAC3O15379 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.5■□□□□ 0.39
HDAC3O15379 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.5■□□□□ 0.39
HDAC3O15379 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.5■□□□□ 0.39
HDAC3O15379 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.5■□□□□ 0.39
HDAC3O15379 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.5■□□□□ 0.39
HDAC3O15379 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.5■□□□□ 0.39
HDAC3O15379 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.5■□□□□ 0.39
HDAC3O15379 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.5■□□□□ 0.39
HDAC3O15379 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.5■□□□□ 0.39
HDAC3O15379 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HDAC3O15379 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC3O15379 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC3O15379 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC3O15379 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC3O15379 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC3O15379 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HDAC3O15379 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC3O15379 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HDAC3O15379 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
HDAC3O15379 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC3O15379 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC3O15379 AP003041.3-201ENST00000527151 707 ntBASIC17.49■□□□□ 0.39
HDAC3O15379 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.49■□□□□ 0.39
HDAC3O15379 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC3O15379 AL023803.3-201ENST00000615559 522 ntBASIC17.49■□□□□ 0.39
HDAC3O15379 AL359736.2-201ENST00000621992 437 ntBASIC17.49■□□□□ 0.39
HDAC3O15379 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC3O15379 HLA-J-201ENST00000462773 1622 ntBASIC17.49■□□□□ 0.39
HDAC3O15379 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC3O15379 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC3O15379 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HDAC3O15379 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.49■□□□□ 0.39
HDAC3O15379 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
HDAC3O15379 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms