Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 COX11P1-201ENST00000489116 835 ntBASIC14.58□□□□□ -0.08
FOXA2Q9Y261 AC104390.1-201ENST00000555663 520 ntBASIC14.58□□□□□ -0.08
FOXA2Q9Y261 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA2Q9Y261 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 AL024508.2-201ENST00000607749 1894 ntBASIC14.57□□□□□ -0.08
FOXA2Q9Y261 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 CD70-202ENST00000423145 881 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.57□□□□□ -0.08
FOXA2Q9Y261 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 AC073508.3-201ENST00000619697 1419 ntBASIC14.57□□□□□ -0.08
FOXA2Q9Y261 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA2Q9Y261 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 WAC-202ENST00000347934 2839 ntTSL 5 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms