Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC105339.3-201ENST00000560043 636 ntBASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 AC125634.1-201ENST00000438758 1403 ntBASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMD1Q9UGP4 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMD1Q9UGP4 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 AC023274.1-201ENST00000418278 595 ntBASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 AC009154.2-201ENST00000621177 724 ntBASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 MTMR9LP-203ENST00000426597 1545 ntBASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMD1Q9UGP4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 AP002414.3-201ENST00000589352 1468 ntBASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 AC004832.2-201ENST00000426397 482 ntBASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 DNAJB3-202ENST00000449667 1266 ntBASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 NKAPP1-205ENST00000585790 367 ntBASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 MTDHP4-201ENST00000600287 670 ntBASIC18.71■□□□□ 0.59
LIMD1Q9UGP4 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms