Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 AC141586.5-201ENST00000624546 2050 ntBASIC19.3■□□□□ 0.68
SIX2Q9NPC8 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 RCN1P1-201ENST00000400413 996 ntBASIC19.3■□□□□ 0.68
SIX2Q9NPC8 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 AC083849.1-201ENST00000615227 514 ntBASIC19.3■□□□□ 0.68
SIX2Q9NPC8 AC009154.2-201ENST00000621177 724 ntBASIC19.3■□□□□ 0.68
SIX2Q9NPC8 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SIX2Q9NPC8 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 FAM8A6P-201ENST00000407496 1135 ntBASIC19.29■□□□□ 0.68
SIX2Q9NPC8 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 RNF126P1-202ENST00000569893 925 ntBASIC19.29■□□□□ 0.68
SIX2Q9NPC8 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 AC133963.1-201ENST00000504166 1679 ntBASIC19.29■□□□□ 0.68
SIX2Q9NPC8 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SIX2Q9NPC8 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 LTB4R2-202ENST00000528054 3092 ntBASIC19.28■□□□□ 0.68
SIX2Q9NPC8 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 AC108860.2-201ENST00000562760 2183 ntBASIC19.28■□□□□ 0.68
SIX2Q9NPC8 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 AP003733.1-201ENST00000491725 852 ntBASIC19.28■□□□□ 0.68
SIX2Q9NPC8 AC063952.2-201ENST00000498792 1227 ntBASIC19.28■□□□□ 0.68
SIX2Q9NPC8 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 RN7SL850P-201ENST00000579959 291 ntBASIC19.28■□□□□ 0.68
SIX2Q9NPC8 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 SIRPAP1-201ENST00000448467 1770 ntBASIC19.28■□□□□ 0.68
SIX2Q9NPC8 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 AL353692.3-201ENST00000407031 1396 ntBASIC19.28■□□□□ 0.68
SIX2Q9NPC8 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SIX2Q9NPC8 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.27■□□□□ 0.68
SIX2Q9NPC8 AC112698.1-201ENST00000510299 916 ntBASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms