Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.59■□□□□ 0.89
USP28Q96RU2 AC066615.1-201ENST00000640911 628 ntBASIC20.59■□□□□ 0.89
USP28Q96RU2 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
USP28Q96RU2 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.59■□□□□ 0.89
USP28Q96RU2 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
USP28Q96RU2 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.59■□□□□ 0.89
USP28Q96RU2 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
USP28Q96RU2 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.59■□□□□ 0.89
USP28Q96RU2 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
USP28Q96RU2 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP28Q96RU2 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
USP28Q96RU2 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.58■□□□□ 0.89
USP28Q96RU2 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP28Q96RU2 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
USP28Q96RU2 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.58■□□□□ 0.89
USP28Q96RU2 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP28Q96RU2 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.58■□□□□ 0.89
USP28Q96RU2 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.58■□□□□ 0.89
USP28Q96RU2 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP28Q96RU2 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.58■□□□□ 0.89
USP28Q96RU2 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP28Q96RU2 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP28Q96RU2 AP000523.1-201ENST00000398242 1049 ntBASIC20.58■□□□□ 0.89
USP28Q96RU2 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.58■□□□□ 0.89
USP28Q96RU2 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.58■□□□□ 0.89
USP28Q96RU2 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.58■□□□□ 0.89
USP28Q96RU2 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.58■□□□□ 0.89
USP28Q96RU2 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.58■□□□□ 0.89
USP28Q96RU2 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.58■□□□□ 0.89
USP28Q96RU2 AC079602.3-201ENST00000623931 403 ntBASIC20.58■□□□□ 0.89
USP28Q96RU2 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
USP28Q96RU2 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.58■□□□□ 0.88
USP28Q96RU2 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USP28Q96RU2 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
USP28Q96RU2 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.57■□□□□ 0.88
USP28Q96RU2 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
USP28Q96RU2 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
USP28Q96RU2 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
USP28Q96RU2 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
USP28Q96RU2 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.57■□□□□ 0.88
USP28Q96RU2 AC010203.1-204ENST00000548782 407 ntBASIC20.57■□□□□ 0.88
USP28Q96RU2 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.57■□□□□ 0.88
USP28Q96RU2 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.57■□□□□ 0.88
USP28Q96RU2 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.57■□□□□ 0.88
USP28Q96RU2 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP28Q96RU2 SIRPAP1-201ENST00000448467 1770 ntBASIC20.57■□□□□ 0.88
USP28Q96RU2 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.57■□□□□ 0.88
USP28Q96RU2 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.56■□□□□ 0.88
USP28Q96RU2 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.56■□□□□ 0.88
USP28Q96RU2 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.56■□□□□ 0.88
USP28Q96RU2 SLC25A3P1-201ENST00000443844 931 ntBASIC20.56■□□□□ 0.88
USP28Q96RU2 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.56■□□□□ 0.88
USP28Q96RU2 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
USP28Q96RU2 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 AC113404.2-201ENST00000507884 177 ntBASIC20.56■□□□□ 0.88
USP28Q96RU2 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.56■□□□□ 0.88
USP28Q96RU2 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.56■□□□□ 0.88
USP28Q96RU2 AC008687.5-201ENST00000593746 558 ntBASIC20.56■□□□□ 0.88
USP28Q96RU2 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
USP28Q96RU2 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP28Q96RU2 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
USP28Q96RU2 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.56■□□□□ 0.88
USP28Q96RU2 AC022898.2-201ENST00000616822 1312 ntBASIC20.55■□□□□ 0.88
USP28Q96RU2 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
USP28Q96RU2 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
USP28Q96RU2 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP28Q96RU2 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
USP28Q96RU2 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.55■□□□□ 0.88
USP28Q96RU2 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms