Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CCDC140Q96MF4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 UBC-206ENST00000538617 1303 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 AC012317.2-201ENST00000623305 2251 ntBASIC13.93□□□□□ -0.18
CCDC140Q96MF4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 AC138932.1-201ENST00000534164 6830 ntBASIC13.93□□□□□ -0.18
CCDC140Q96MF4 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 AL136038.3-201ENST00000561909 1096 ntBASIC13.93□□□□□ -0.18
CCDC140Q96MF4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 AC009154.2-201ENST00000621177 724 ntBASIC13.93□□□□□ -0.18
CCDC140Q96MF4 BCL2-203ENST00000589955 5011 ntBASIC13.93□□□□□ -0.18
CCDC140Q96MF4 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 AC005332.8-201ENST00000622750 2735 ntBASIC13.93□□□□□ -0.18
CCDC140Q96MF4 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 GNAS-203ENST00000306120 1878 ntBASIC13.93□□□□□ -0.18
CCDC140Q96MF4 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC140Q96MF4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 AR-207ENST00000612010 3896 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 BAALC-202ENST00000306391 243 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 BAALC-204ENST00000330955 222 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 AL590326.2-201ENST00000625139 305 ntBASIC13.92□□□□□ -0.18
CCDC140Q96MF4 AL121956.5-201ENST00000625261 221 ntBASIC13.92□□□□□ -0.18
CCDC140Q96MF4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 AC006116.8-202ENST00000587620 1550 ntBASIC13.92□□□□□ -0.18
CCDC140Q96MF4 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
CCDC140Q96MF4 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms