Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 AL355312.1-201ENST00000407115 2176 ntBASIC17.32■□□□□ 0.36
VPS33AQ96AX1 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS33AQ96AX1 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 REXO1L10P-201ENST00000615707 1290 ntBASIC17.31■□□□□ 0.36
VPS33AQ96AX1 ITM2C-210ENST00000620962 501 ntBASIC17.31■□□□□ 0.36
VPS33AQ96AX1 REXO1L12P-201ENST00000622156 912 ntBASIC17.31■□□□□ 0.36
VPS33AQ96AX1 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 AL024508.2-201ENST00000607749 1894 ntBASIC17.31■□□□□ 0.36
VPS33AQ96AX1 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS33AQ96AX1 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 PRORSD1P-201ENST00000295112 541 ntBASIC17.3■□□□□ 0.36
VPS33AQ96AX1 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 TSPY20P-201ENST00000450910 630 ntBASIC17.3■□□□□ 0.36
VPS33AQ96AX1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS33AQ96AX1 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS33AQ96AX1 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VPS33AQ96AX1 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS33AQ96AX1 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS33AQ96AX1 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS33AQ96AX1 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms