Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 PTBP1P-201ENST00000554374 1601 ntBASIC11.23□□□□□ -0.61
LINC00643Q86TS7 AMT-233ENST00000636522 1620 ntTSL 2 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 KRT8P20-201ENST00000423953 1409 ntBASIC11.22□□□□□ -0.61
LINC00643Q86TS7 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 DUX4L9-201ENST00000449051 1259 ntBASIC11.22□□□□□ -0.61
LINC00643Q86TS7 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 AC053503.5-201ENST00000601508 636 ntBASIC11.22□□□□□ -0.61
LINC00643Q86TS7 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 AL365203.3-201ENST00000609742 2057 ntBASIC11.22□□□□□ -0.61
LINC00643Q86TS7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LINC00643Q86TS7 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 SDHAP1-207ENST00000440850 2000 ntBASIC11.21□□□□□ -0.61
LINC00643Q86TS7 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 GOLGA6L5P-202ENST00000515341 1828 ntBASIC11.21□□□□□ -0.61
LINC00643Q86TS7 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC11.21□□□□□ -0.61
LINC00643Q86TS7 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC11.21□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms