Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
KRT40Q6A162 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT40Q6A162 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT40Q6A162 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
KRT40Q6A162 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
KRT40Q6A162 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
KRT40Q6A162 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
KRT40Q6A162 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
KRT40Q6A162 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.87■□□□□ 0.93
KRT40Q6A162 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
KRT40Q6A162 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
KRT40Q6A162 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.86■□□□□ 0.93
KRT40Q6A162 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.86■□□□□ 0.93
KRT40Q6A162 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.86■□□□□ 0.93
KRT40Q6A162 AC026471.1-201ENST00000564629 3026 ntBASIC20.86■□□□□ 0.93
KRT40Q6A162 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT40Q6A162 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
KRT40Q6A162 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
KRT40Q6A162 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.86■□□□□ 0.93
KRT40Q6A162 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.86■□□□□ 0.93
KRT40Q6A162 AC113404.2-201ENST00000507884 177 ntBASIC20.86■□□□□ 0.93
KRT40Q6A162 VENTXP5-201ENST00000523979 775 ntBASIC20.86■□□□□ 0.93
KRT40Q6A162 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT40Q6A162 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.86■□□□□ 0.93
KRT40Q6A162 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.86■□□□□ 0.93
KRT40Q6A162 KRT18P55-202ENST00000578578 1546 ntBASIC20.86■□□□□ 0.93
KRT40Q6A162 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT40Q6A162 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.86■□□□□ 0.93
KRT40Q6A162 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.86■□□□□ 0.93
KRT40Q6A162 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
KRT40Q6A162 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.86■□□□□ 0.93
KRT40Q6A162 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.86■□□□□ 0.93
KRT40Q6A162 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
KRT40Q6A162 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.85■□□□□ 0.93
KRT40Q6A162 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.85■□□□□ 0.93
KRT40Q6A162 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
KRT40Q6A162 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.85■□□□□ 0.93
KRT40Q6A162 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.85■□□□□ 0.93
KRT40Q6A162 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
KRT40Q6A162 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.85■□□□□ 0.93
KRT40Q6A162 KRT89P-201ENST00000620027 1478 ntBASIC20.85■□□□□ 0.93
KRT40Q6A162 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
KRT40Q6A162 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
KRT40Q6A162 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
KRT40Q6A162 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.85■□□□□ 0.93
KRT40Q6A162 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.85■□□□□ 0.93
KRT40Q6A162 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
KRT40Q6A162 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.84■□□□□ 0.93
KRT40Q6A162 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.84■□□□□ 0.93
KRT40Q6A162 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.84■□□□□ 0.93
KRT40Q6A162 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.84■□□□□ 0.93
KRT40Q6A162 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.84■□□□□ 0.93
KRT40Q6A162 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.84■□□□□ 0.93
KRT40Q6A162 HYMAI.1-201ENST00000620949 238 ntBASIC20.84■□□□□ 0.93
KRT40Q6A162 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 AC012317.2-201ENST00000623305 2251 ntBASIC20.84■□□□□ 0.93
KRT40Q6A162 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.84■□□□□ 0.93
KRT40Q6A162 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
KRT40Q6A162 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms