Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
ABCA4P78363 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.45■□□□□ 0.06
ABCA4P78363 AC096633.1-201ENST00000422446 749 ntBASIC15.45■□□□□ 0.06
ABCA4P78363 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.45■□□□□ 0.06
ABCA4P78363 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.45■□□□□ 0.06
ABCA4P78363 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.45■□□□□ 0.06
ABCA4P78363 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.45■□□□□ 0.06
ABCA4P78363 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
ABCA4P78363 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC15.45■□□□□ 0.06
ABCA4P78363 AC083906.6-201ENST00000641366 219 ntBASIC15.45■□□□□ 0.06
ABCA4P78363 AC079781.4-201ENST00000641908 219 ntBASIC15.45■□□□□ 0.06
ABCA4P78363 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
ABCA4P78363 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
ABCA4P78363 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC15.45■□□□□ 0.06
ABCA4P78363 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
ABCA4P78363 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.44■□□□□ 0.06
ABCA4P78363 AC023274.1-201ENST00000418278 595 ntBASIC15.44■□□□□ 0.06
ABCA4P78363 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.44■□□□□ 0.06
ABCA4P78363 OR7E14P-202ENST00000530490 1290 ntBASIC15.44■□□□□ 0.06
ABCA4P78363 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.44■□□□□ 0.06
ABCA4P78363 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.44■□□□□ 0.06
ABCA4P78363 AC008687.5-201ENST00000593746 558 ntBASIC15.44■□□□□ 0.06
ABCA4P78363 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
ABCA4P78363 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.44■□□□□ 0.06
ABCA4P78363 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
ABCA4P78363 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
ABCA4P78363 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
ABCA4P78363 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.44■□□□□ 0.06
ABCA4P78363 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.43■□□□□ 0.06
ABCA4P78363 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
ABCA4P78363 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.43■□□□□ 0.06
ABCA4P78363 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15.43■□□□□ 0.06
ABCA4P78363 KRT18P65-201ENST00000439811 1286 ntBASIC15.43■□□□□ 0.06
ABCA4P78363 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.43■□□□□ 0.06
ABCA4P78363 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.43■□□□□ 0.06
ABCA4P78363 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.43■□□□□ 0.06
ABCA4P78363 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
ABCA4P78363 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
ABCA4P78363 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.43■□□□□ 0.06
ABCA4P78363 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
ABCA4P78363 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
ABCA4P78363 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.43■□□□□ 0.06
ABCA4P78363 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.43■□□□□ 0.06
ABCA4P78363 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC15.43■□□□□ 0.06
ABCA4P78363 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.43■□□□□ 0.06
ABCA4P78363 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC15.43■□□□□ 0.06
ABCA4P78363 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC15.43■□□□□ 0.06
ABCA4P78363 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 LINC01126-201ENST00000623515 1646 ntBASIC15.43■□□□□ 0.06
ABCA4P78363 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ABCA4P78363 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.43■□□□□ 0.06
ABCA4P78363 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.43■□□□□ 0.06
ABCA4P78363 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 AL035633.1-201ENST00000406139 838 ntBASIC15.42■□□□□ 0.06
ABCA4P78363 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC15.42■□□□□ 0.06
ABCA4P78363 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
ABCA4P78363 MIR3687-2-201ENST00000577708 61 ntBASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms