Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
NR1H2P55055 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.1■□□□□ 0.33
NR1H2P55055 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.1■□□□□ 0.33
NR1H2P55055 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
NR1H2P55055 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.1■□□□□ 0.33
NR1H2P55055 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 UNC93B2-201ENST00000285383 730 ntBASIC17.1■□□□□ 0.33
NR1H2P55055 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.1■□□□□ 0.33
NR1H2P55055 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.1■□□□□ 0.33
NR1H2P55055 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.1■□□□□ 0.33
NR1H2P55055 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
NR1H2P55055 AL596257.1-201ENST00000641463 2694 ntBASIC17.1■□□□□ 0.33
NR1H2P55055 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
NR1H2P55055 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NR1H2P55055 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.09■□□□□ 0.33
NR1H2P55055 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
NR1H2P55055 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.09■□□□□ 0.33
NR1H2P55055 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
NR1H2P55055 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
NR1H2P55055 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.09■□□□□ 0.33
NR1H2P55055 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.09■□□□□ 0.33
NR1H2P55055 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.09■□□□□ 0.33
NR1H2P55055 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
NR1H2P55055 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
NR1H2P55055 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
NR1H2P55055 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 KRT16P1-201ENST00000399124 1418 ntBASIC17.09■□□□□ 0.33
NR1H2P55055 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
NR1H2P55055 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
NR1H2P55055 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H2P55055 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.08■□□□□ 0.33
NR1H2P55055 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H2P55055 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
NR1H2P55055 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H2P55055 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H2P55055 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.08■□□□□ 0.32
NR1H2P55055 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.08■□□□□ 0.32
NR1H2P55055 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.08■□□□□ 0.32
NR1H2P55055 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.08■□□□□ 0.32
NR1H2P55055 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.08■□□□□ 0.32
NR1H2P55055 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
NR1H2P55055 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
NR1H2P55055 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.08■□□□□ 0.32
NR1H2P55055 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.08■□□□□ 0.32
NR1H2P55055 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
NR1H2P55055 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H2P55055 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H2P55055 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H2P55055 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.07■□□□□ 0.32
NR1H2P55055 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H2P55055 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H2P55055 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms