Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC010460.3-201ENST00000511359 1579 ntBASIC17.85■□□□□ 0.45
CXCL12P48061 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.85■□□□□ 0.45
CXCL12P48061 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.85■□□□□ 0.45
CXCL12P48061 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.85■□□□□ 0.45
CXCL12P48061 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.85■□□□□ 0.45
CXCL12P48061 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.85■□□□□ 0.45
CXCL12P48061 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.85■□□□□ 0.45
CXCL12P48061 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CXCL12P48061 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.85■□□□□ 0.45
CXCL12P48061 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CXCL12P48061 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.84■□□□□ 0.45
CXCL12P48061 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.84■□□□□ 0.45
CXCL12P48061 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.84■□□□□ 0.45
CXCL12P48061 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.84■□□□□ 0.45
CXCL12P48061 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.84■□□□□ 0.45
CXCL12P48061 PRSS29P-201ENST00000440800 595 ntBASIC17.84■□□□□ 0.45
CXCL12P48061 AC108073.2-201ENST00000464002 357 ntBASIC17.84■□□□□ 0.45
CXCL12P48061 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.84■□□□□ 0.45
CXCL12P48061 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.84■□□□□ 0.45
CXCL12P48061 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.84■□□□□ 0.45
CXCL12P48061 AL078644.1-201ENST00000609881 752 ntBASIC17.84■□□□□ 0.45
CXCL12P48061 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CXCL12P48061 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CXCL12P48061 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CXCL12P48061 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CXCL12P48061 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CXCL12P48061 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CXCL12P48061 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CXCL12P48061 AC006504.4-201ENST00000592118 1568 ntBASIC17.83■□□□□ 0.45
CXCL12P48061 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.83■□□□□ 0.45
CXCL12P48061 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CXCL12P48061 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.83■□□□□ 0.45
CXCL12P48061 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.83■□□□□ 0.45
CXCL12P48061 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
CXCL12P48061 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL12P48061 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.83■□□□□ 0.44
CXCL12P48061 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.83■□□□□ 0.44
CXCL12P48061 MIR770-201ENST00000390219 98 ntBASIC17.83■□□□□ 0.44
CXCL12P48061 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL12P48061 ELK2BP-201ENST00000415014 1224 ntBASIC17.83■□□□□ 0.44
CXCL12P48061 HCG4B-203ENST00000450128 991 ntBASIC17.83■□□□□ 0.44
CXCL12P48061 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.83■□□□□ 0.44
CXCL12P48061 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.83■□□□□ 0.44
CXCL12P48061 AC011467.4-201ENST00000594891 528 ntBASIC17.83■□□□□ 0.44
CXCL12P48061 AC106028.4-201ENST00000614509 607 ntBASIC17.83■□□□□ 0.44
CXCL12P48061 AL513190.1-201ENST00000621254 727 ntBASIC17.83■□□□□ 0.44
CXCL12P48061 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL12P48061 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL12P48061 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL12P48061 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL12P48061 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL12P48061 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL12P48061 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CXCL12P48061 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
CXCL12P48061 GMCL1P1-201ENST00000463439 1581 ntBASIC17.83■□□□□ 0.44
CXCL12P48061 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CXCL12P48061 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CXCL12P48061 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.82■□□□□ 0.44
CXCL12P48061 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.82■□□□□ 0.44
CXCL12P48061 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
CXCL12P48061 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.82■□□□□ 0.44
CXCL12P48061 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.82■□□□□ 0.44
CXCL12P48061 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.82■□□□□ 0.44
CXCL12P48061 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CXCL12P48061 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CXCL12P48061 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.82■□□□□ 0.44
CXCL12P48061 GPR89P-201ENST00000407924 1495 ntBASIC17.82■□□□□ 0.44
CXCL12P48061 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CXCL12P48061 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms