Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC008764.6-201ENST00000595909 2069 ntBASIC17.63■□□□□ 0.41
SHMT2P34897 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 LINC01126-201ENST00000623515 1646 ntBASIC17.63■□□□□ 0.41
SHMT2P34897 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.63■□□□□ 0.41
SHMT2P34897 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.63■□□□□ 0.41
SHMT2P34897 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SHMT2P34897 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SHMT2P34897 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SHMT2P34897 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.63■□□□□ 0.41
SHMT2P34897 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SHMT2P34897 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.63■□□□□ 0.41
SHMT2P34897 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.63■□□□□ 0.41
SHMT2P34897 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHMT2P34897 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.63■□□□□ 0.41
SHMT2P34897 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.62■□□□□ 0.41
SHMT2P34897 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.62■□□□□ 0.41
SHMT2P34897 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SHMT2P34897 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.62■□□□□ 0.41
SHMT2P34897 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.62■□□□□ 0.41
SHMT2P34897 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.62■□□□□ 0.41
SHMT2P34897 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.62■□□□□ 0.41
SHMT2P34897 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.62■□□□□ 0.41
SHMT2P34897 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.62■□□□□ 0.41
SHMT2P34897 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 ESPNP-201ENST00000270691 2015 ntBASIC17.62■□□□□ 0.41
SHMT2P34897 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.62■□□□□ 0.41
SHMT2P34897 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.62■□□□□ 0.41
SHMT2P34897 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHMT2P34897 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.61■□□□□ 0.41
SHMT2P34897 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.61■□□□□ 0.41
SHMT2P34897 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
SHMT2P34897 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SHMT2P34897 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.61■□□□□ 0.41
SHMT2P34897 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.61■□□□□ 0.41
SHMT2P34897 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.61■□□□□ 0.41
SHMT2P34897 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.61■□□□□ 0.41
SHMT2P34897 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.61■□□□□ 0.41
SHMT2P34897 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.61■□□□□ 0.41
SHMT2P34897 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.61■□□□□ 0.41
SHMT2P34897 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.61■□□□□ 0.41
SHMT2P34897 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.61■□□□□ 0.41
SHMT2P34897 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.61■□□□□ 0.41
SHMT2P34897 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.61■□□□□ 0.41
SHMT2P34897 AL353692.3-201ENST00000407031 1396 ntBASIC17.61■□□□□ 0.41
SHMT2P34897 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
SHMT2P34897 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SHMT2P34897 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SHMT2P34897 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHMT2P34897 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SHMT2P34897 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SHMT2P34897 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
SHMT2P34897 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.6■□□□□ 0.41
SHMT2P34897 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHMT2P34897 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms