Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CKS2P33552 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.29
CKS2P33552 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
CKS2P33552 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CKS2P33552 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.27□□□□□ -0.29
CKS2P33552 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CKS2P33552 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
CKS2P33552 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CKS2P33552 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CKS2P33552 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CKS2P33552 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CKS2P33552 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC13.27□□□□□ -0.29
CKS2P33552 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CKS2P33552 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.26□□□□□ -0.29
CKS2P33552 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
CKS2P33552 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.26□□□□□ -0.29
CKS2P33552 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.26□□□□□ -0.29
CKS2P33552 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
CKS2P33552 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 AP000593.1-201ENST00000393668 712 ntBASIC13.26□□□□□ -0.29
CKS2P33552 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 METTL26-203ENST00000397664 604 ntTSL 2 BASIC13.26□□□□□ -0.29
CKS2P33552 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 LGR4-203ENST00000480977 492 ntTSL 2 BASIC13.26□□□□□ -0.29
CKS2P33552 KRT18P41-201ENST00000518924 1277 ntBASIC13.26□□□□□ -0.29
CKS2P33552 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC13.26□□□□□ -0.29
CKS2P33552 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC13.26□□□□□ -0.29
CKS2P33552 AC092368.3-202ENST00000574180 1591 ntBASIC13.26□□□□□ -0.29
CKS2P33552 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.26□□□□□ -0.29
CKS2P33552 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC13.26□□□□□ -0.29
CKS2P33552 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CKS2P33552 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC13.26□□□□□ -0.29
CKS2P33552 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CKS2P33552 AC046158.3-201ENST00000624947 2558 ntBASIC13.26□□□□□ -0.29
CKS2P33552 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
CKS2P33552 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.25□□□□□ -0.29
CKS2P33552 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CKS2P33552 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CKS2P33552 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC13.25□□□□□ -0.29
CKS2P33552 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CKS2P33552 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CKS2P33552 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
CKS2P33552 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
CKS2P33552 UBALD1-205ENST00000590891 2641 ntBASIC13.25□□□□□ -0.29
CKS2P33552 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC13.25□□□□□ -0.29
CKS2P33552 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CKS2P33552 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC13.25□□□□□ -0.29
CKS2P33552 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC13.25□□□□□ -0.29
CKS2P33552 CFL2-205ENST00000555765 632 ntTSL 2 BASIC13.25□□□□□ -0.29
CKS2P33552 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC13.25□□□□□ -0.29
CKS2P33552 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC13.25□□□□□ -0.29
CKS2P33552 AC120498.8-201ENST00000614275 531 ntBASIC13.25□□□□□ -0.29
CKS2P33552 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC13.25□□□□□ -0.29
CKS2P33552 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC13.25□□□□□ -0.29
CKS2P33552 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CKS2P33552 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms