Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.25■□□□□ 0.83
CIITAP33076 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.25■□□□□ 0.83
CIITAP33076 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CIITAP33076 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CIITAP33076 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.25■□□□□ 0.83
CIITAP33076 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CIITAP33076 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.25■□□□□ 0.83
CIITAP33076 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CIITAP33076 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.24■□□□□ 0.83
CIITAP33076 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.24■□□□□ 0.83
CIITAP33076 KRT126P-201ENST00000549467 1181 ntBASIC20.24■□□□□ 0.83
CIITAP33076 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.24■□□□□ 0.83
CIITAP33076 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.24■□□□□ 0.83
CIITAP33076 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.24■□□□□ 0.83
CIITAP33076 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CIITAP33076 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.24■□□□□ 0.83
CIITAP33076 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.24■□□□□ 0.83
CIITAP33076 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.24■□□□□ 0.83
CIITAP33076 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.24■□□□□ 0.83
CIITAP33076 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.24■□□□□ 0.83
CIITAP33076 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CIITAP33076 TP73-AS1-210ENST00000637775 1455 ntBASIC20.24■□□□□ 0.83
CIITAP33076 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CIITAP33076 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.23■□□□□ 0.83
CIITAP33076 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CIITAP33076 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CIITAP33076 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.23■□□□□ 0.83
CIITAP33076 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CIITAP33076 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CIITAP33076 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CIITAP33076 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CIITAP33076 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CIITAP33076 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CIITAP33076 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CIITAP33076 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
CIITAP33076 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CIITAP33076 KRT18P31-201ENST00000506277 1292 ntBASIC20.23■□□□□ 0.83
CIITAP33076 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CIITAP33076 AL121772.3-201ENST00000610840 674 ntBASIC20.23■□□□□ 0.83
CIITAP33076 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.23■□□□□ 0.83
CIITAP33076 AC114341.1-201ENST00000618070 349 ntBASIC20.23■□□□□ 0.83
CIITAP33076 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CIITAP33076 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CIITAP33076 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CIITAP33076 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.23■□□□□ 0.83
CIITAP33076 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CIITAP33076 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CIITAP33076 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.23■□□□□ 0.83
CIITAP33076 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CIITAP33076 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.23■□□□□ 0.83
CIITAP33076 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CIITAP33076 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CIITAP33076 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CIITAP33076 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.22■□□□□ 0.83
CIITAP33076 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CIITAP33076 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.22■□□□□ 0.83
CIITAP33076 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CIITAP33076 KRT16P4-201ENST00000453883 522 ntBASIC20.22■□□□□ 0.83
CIITAP33076 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.22■□□□□ 0.83
CIITAP33076 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.22■□□□□ 0.83
CIITAP33076 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.22■□□□□ 0.83
CIITAP33076 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.22■□□□□ 0.83
CIITAP33076 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.22■□□□□ 0.83
CIITAP33076 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.22■□□□□ 0.83
CIITAP33076 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CIITAP33076 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.22■□□□□ 0.83
CIITAP33076 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CIITAP33076 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.22■□□□□ 0.83
CIITAP33076 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CIITAP33076 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.21■□□□□ 0.83
CIITAP33076 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms