Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.1■□□□□ 0.49
PTPN4P29074 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.1■□□□□ 0.49
PTPN4P29074 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN4P29074 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.09■□□□□ 0.49
PTPN4P29074 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PTPN4P29074 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
PTPN4P29074 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.09■□□□□ 0.49
PTPN4P29074 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
PTPN4P29074 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.09■□□□□ 0.49
PTPN4P29074 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.09■□□□□ 0.49
PTPN4P29074 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.09■□□□□ 0.49
PTPN4P29074 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.09■□□□□ 0.49
PTPN4P29074 RNF152P1-201ENST00000397754 604 ntBASIC18.09■□□□□ 0.49
PTPN4P29074 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PTPN4P29074 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 CA15P1-201ENST00000481698 905 ntBASIC18.09■□□□□ 0.49
PTPN4P29074 AL512604.3-201ENST00000569583 964 ntBASIC18.09■□□□□ 0.49
PTPN4P29074 AC139887.4-201ENST00000607877 719 ntBASIC18.09■□□□□ 0.49
PTPN4P29074 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
PTPN4P29074 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.09■□□□□ 0.49
PTPN4P29074 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.09■□□□□ 0.49
PTPN4P29074 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN4P29074 AC011676.5-201ENST00000624864 2660 ntBASIC18.08■□□□□ 0.49
PTPN4P29074 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PTPN4P29074 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.08■□□□□ 0.49
PTPN4P29074 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
PTPN4P29074 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
PTPN4P29074 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.49
PTPN4P29074 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
PTPN4P29074 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.08■□□□□ 0.49
PTPN4P29074 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PTPN4P29074 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
PTPN4P29074 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
PTPN4P29074 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN4P29074 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN4P29074 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.08■□□□□ 0.48
PTPN4P29074 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.08■□□□□ 0.48
PTPN4P29074 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.08■□□□□ 0.48
PTPN4P29074 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.08■□□□□ 0.48
PTPN4P29074 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.08■□□□□ 0.48
PTPN4P29074 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN4P29074 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
PTPN4P29074 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN4P29074 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.08■□□□□ 0.48
PTPN4P29074 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.08■□□□□ 0.48
PTPN4P29074 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN4P29074 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.07■□□□□ 0.48
PTPN4P29074 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.07■□□□□ 0.48
PTPN4P29074 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
PTPN4P29074 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.07■□□□□ 0.48
PTPN4P29074 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.07■□□□□ 0.48
PTPN4P29074 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.07■□□□□ 0.48
PTPN4P29074 AL139384.1-201ENST00000612143 3047 ntBASIC18.07■□□□□ 0.48
PTPN4P29074 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.07■□□□□ 0.48
PTPN4P29074 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.07■□□□□ 0.48
PTPN4P29074 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.07■□□□□ 0.48
PTPN4P29074 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.07■□□□□ 0.48
PTPN4P29074 COX11P1-201ENST00000489116 835 ntBASIC18.07■□□□□ 0.48
PTPN4P29074 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
PTPN4P29074 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.07■□□□□ 0.48
PTPN4P29074 CKBP1-201ENST00000565489 1086 ntBASIC18.07■□□□□ 0.48
PTPN4P29074 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.07■□□□□ 0.48
PTPN4P29074 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
PTPN4P29074 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
PTPN4P29074 MYC-208ENST00000641036 567 ntBASIC18.07■□□□□ 0.48
PTPN4P29074 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
PTPN4P29074 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.07■□□□□ 0.48
PTPN4P29074 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.07■□□□□ 0.48
PTPN4P29074 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
PTPN4P29074 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTPN4P29074 MTMR9LP-203ENST00000426597 1545 ntBASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms