Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.93■□□□□ 0.46
MSH3P20585 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.93■□□□□ 0.46
MSH3P20585 RNF126P1-202ENST00000569893 925 ntBASIC17.93■□□□□ 0.46
MSH3P20585 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.93■□□□□ 0.46
MSH3P20585 AC011498.5-201ENST00000592027 486 ntBASIC17.93■□□□□ 0.46
MSH3P20585 AC091076.1-201ENST00000610741 619 ntBASIC17.93■□□□□ 0.46
MSH3P20585 AC004263.2-201ENST00000617183 678 ntBASIC17.93■□□□□ 0.46
MSH3P20585 AL358472.4-201ENST00000633140 710 ntBASIC17.93■□□□□ 0.46
MSH3P20585 AP000550.4-202ENST00000639755 178 ntBASIC17.93■□□□□ 0.46
MSH3P20585 LINC00602-201ENST00000629776 2065 ntBASIC17.93■□□□□ 0.46
MSH3P20585 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.93■□□□□ 0.46
MSH3P20585 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
MSH3P20585 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 AL353692.3-201ENST00000407031 1396 ntBASIC17.92■□□□□ 0.46
MSH3P20585 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.92■□□□□ 0.46
MSH3P20585 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 AL390719.2-201ENST00000606993 987 ntBASIC17.92■□□□□ 0.46
MSH3P20585 AC116407.4-201ENST00000623319 1061 ntBASIC17.92■□□□□ 0.46
MSH3P20585 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.92■□□□□ 0.46
MSH3P20585 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.92■□□□□ 0.46
MSH3P20585 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.92■□□□□ 0.46
MSH3P20585 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.92■□□□□ 0.46
MSH3P20585 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.92■□□□□ 0.46
MSH3P20585 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
MSH3P20585 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
MSH3P20585 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH3P20585 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.91■□□□□ 0.46
MSH3P20585 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
MSH3P20585 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.91■□□□□ 0.46
MSH3P20585 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
MSH3P20585 AL133373.2-201ENST00000623187 2828 ntBASIC17.91■□□□□ 0.46
MSH3P20585 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
MSH3P20585 AC093010.1-201ENST00000473625 1624 ntBASIC17.91■□□□□ 0.46
MSH3P20585 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.91■□□□□ 0.46
MSH3P20585 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.91■□□□□ 0.46
MSH3P20585 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
MSH3P20585 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.91■□□□□ 0.46
MSH3P20585 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.91■□□□□ 0.46
MSH3P20585 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.91■□□□□ 0.46
MSH3P20585 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.91■□□□□ 0.46
MSH3P20585 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 TSPY22P-201ENST00000427496 604 ntBASIC17.91■□□□□ 0.46
MSH3P20585 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.91■□□□□ 0.46
MSH3P20585 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.91■□□□□ 0.46
MSH3P20585 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.91■□□□□ 0.46
MSH3P20585 REXO1L9P-201ENST00000604264 2108 ntBASIC17.91■□□□□ 0.46
MSH3P20585 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH3P20585 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
MSH3P20585 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
MSH3P20585 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms