Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HOXC4P09017 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HOXC4P09017 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.51■□□□□ 0.39
HOXC4P09017 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.51■□□□□ 0.39
HOXC4P09017 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXC4P09017 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
HOXC4P09017 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXC4P09017 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 PMPCAP1-201ENST00000508114 1576 ntBASIC17.5■□□□□ 0.39
HOXC4P09017 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HOXC4P09017 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXC4P09017 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HOXC4P09017 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXC4P09017 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.5■□□□□ 0.39
HOXC4P09017 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXC4P09017 AC018712.1-201ENST00000455767 687 ntBASIC17.5■□□□□ 0.39
HOXC4P09017 RNPS1P1-201ENST00000507437 918 ntBASIC17.5■□□□□ 0.39
HOXC4P09017 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
HOXC4P09017 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.5■□□□□ 0.39
HOXC4P09017 AL139288.1-201ENST00000623748 933 ntBASIC17.5■□□□□ 0.39
HOXC4P09017 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXC4P09017 FLJ13224-201ENST00000313737 1514 ntBASIC17.5■□□□□ 0.39
HOXC4P09017 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXC4P09017 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 AC120498.9-201ENST00000339021 3867 ntBASIC17.5■□□□□ 0.39
HOXC4P09017 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXC4P09017 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXC4P09017 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 AL356309.3-201ENST00000624132 1934 ntBASIC17.49■□□□□ 0.39
HOXC4P09017 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXC4P09017 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXC4P09017 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.49■□□□□ 0.39
HOXC4P09017 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXC4P09017 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HOXC4P09017 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXC4P09017 AC073648.2-201ENST00000510116 352 ntBASIC17.49■□□□□ 0.39
HOXC4P09017 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.49■□□□□ 0.39
HOXC4P09017 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.49■□□□□ 0.39
HOXC4P09017 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXC4P09017 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
HOXC4P09017 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXC4P09017 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC4P09017 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC4P09017 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
HOXC4P09017 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC4P09017 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC4P09017 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC4P09017 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.48■□□□□ 0.39
HOXC4P09017 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.48■□□□□ 0.39
HOXC4P09017 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXC4P09017 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.48■□□□□ 0.39
HOXC4P09017 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.48■□□□□ 0.39
HOXC4P09017 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.48■□□□□ 0.39
HOXC4P09017 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.48■□□□□ 0.39
HOXC4P09017 AP001005.1-201ENST00000571755 1248 ntBASIC17.48■□□□□ 0.39
HOXC4P09017 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC4P09017 AC073592.4-201ENST00000623827 446 ntBASIC17.48■□□□□ 0.39
HOXC4P09017 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
HOXC4P09017 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
HOXC4P09017 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC4P09017 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
HOXC4P09017 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXC4P09017 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.48■□□□□ 0.39
HOXC4P09017 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
HOXC4P09017 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXC4P09017 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.48■□□□□ 0.39
HOXC4P09017 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HOXC4P09017 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.47■□□□□ 0.39
HOXC4P09017 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms