Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SIX3O95343 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SIX3O95343 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SIX3O95343 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SIX3O95343 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX3O95343 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX3O95343 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX3O95343 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.61■□□□□ 0.41
SIX3O95343 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SIX3O95343 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 LINC00167-201ENST00000530583 1419 ntBASIC17.61■□□□□ 0.41
SIX3O95343 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
SIX3O95343 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SIX3O95343 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SIX3O95343 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX3O95343 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX3O95343 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.6■□□□□ 0.41
SIX3O95343 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX3O95343 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 AC141586.5-201ENST00000624546 2050 ntBASIC17.6■□□□□ 0.41
SIX3O95343 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX3O95343 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SIX3O95343 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SIX3O95343 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX3O95343 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX3O95343 PVRIG2P-201ENST00000435460 978 ntBASIC17.6■□□□□ 0.41
SIX3O95343 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.6■□□□□ 0.41
SIX3O95343 AC141257.4-201ENST00000634557 245 ntBASIC17.6■□□□□ 0.41
SIX3O95343 AC136944.6-201ENST00000634818 245 ntBASIC17.6■□□□□ 0.41
SIX3O95343 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX3O95343 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SIX3O95343 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 LINC00602-201ENST00000629776 2065 ntBASIC17.6■□□□□ 0.41
SIX3O95343 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SIX3O95343 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SIX3O95343 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX3O95343 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 AC108860.2-201ENST00000562760 2183 ntBASIC17.59■□□□□ 0.41
SIX3O95343 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX3O95343 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX3O95343 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX3O95343 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 KRT18P22-201ENST00000402024 1347 ntBASIC17.59■□□□□ 0.41
SIX3O95343 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.59■□□□□ 0.41
SIX3O95343 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX3O95343 GCSHP2-201ENST00000560971 527 ntBASIC17.59■□□□□ 0.41
SIX3O95343 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SIX3O95343 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX3O95343 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SIX3O95343 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SIX3O95343 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX3O95343 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX3O95343 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SIX3O95343 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX3O95343 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.58■□□□□ 0.41
SIX3O95343 AC020916.1-201ENST00000587762 1774 ntBASIC17.58■□□□□ 0.41
SIX3O95343 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms