Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AL121894.2-201ENST00000602977 491 ntBASIC22.56■■□□□ 1.2
CACNA1FO60840 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC22.56■■□□□ 1.2
CACNA1FO60840 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC22.56■■□□□ 1.2
CACNA1FO60840 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC22.56■■□□□ 1.2
CACNA1FO60840 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 AL691432.3-201ENST00000621860 400 ntBASIC22.56■■□□□ 1.2
CACNA1FO60840 PAN3-AS1-201ENST00000563843 1351 ntBASIC22.56■■□□□ 1.2
CACNA1FO60840 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
CACNA1FO60840 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1FO60840 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CACNA1FO60840 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CACNA1FO60840 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CACNA1FO60840 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC22.55■■□□□ 1.2
CACNA1FO60840 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC22.55■■□□□ 1.2
CACNA1FO60840 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CACNA1FO60840 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CACNA1FO60840 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CACNA1FO60840 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CACNA1FO60840 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC22.55■■□□□ 1.2
CACNA1FO60840 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC22.55■■□□□ 1.2
CACNA1FO60840 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC22.55■■□□□ 1.2
CACNA1FO60840 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC22.55■■□□□ 1.2
CACNA1FO60840 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC22.55■■□□□ 1.2
CACNA1FO60840 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC22.55■■□□□ 1.2
CACNA1FO60840 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CACNA1FO60840 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CACNA1FO60840 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CACNA1FO60840 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC22.55■■□□□ 1.2
CACNA1FO60840 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC22.55■■□□□ 1.2
CACNA1FO60840 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC22.54■■□□□ 1.2
CACNA1FO60840 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 ACTG1P4-201ENST00000425123 1122 ntBASIC22.54■■□□□ 1.2
CACNA1FO60840 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
CACNA1FO60840 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC22.54■■□□□ 1.2
CACNA1FO60840 AC109462.3-201ENST00000573934 613 ntBASIC22.54■■□□□ 1.2
CACNA1FO60840 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC22.54■■□□□ 1.2
CACNA1FO60840 AL591684.3-201ENST00000605187 298 ntBASIC22.54■■□□□ 1.2
CACNA1FO60840 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC22.54■■□□□ 1.2
CACNA1FO60840 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 AL773604.1-201ENST00000617417 272 ntBASIC22.54■■□□□ 1.2
CACNA1FO60840 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC22.54■■□□□ 1.2
CACNA1FO60840 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC22.54■■□□□ 1.2
CACNA1FO60840 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC22.54■■□□□ 1.2
CACNA1FO60840 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
CACNA1FO60840 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
CACNA1FO60840 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC22.54■■□□□ 1.2
CACNA1FO60840 RCN1P2-201ENST00000398357 915 ntBASIC22.54■■□□□ 1.2
CACNA1FO60840 AC104692.2-201ENST00000603054 253 ntBASIC22.54■■□□□ 1.2
CACNA1FO60840 AL121912.1-201ENST00000603683 238 ntBASIC22.54■■□□□ 1.2
CACNA1FO60840 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1FO60840 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1FO60840 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC22.53■■□□□ 1.2
CACNA1FO60840 FUT8-AS1-201ENST00000621019 1521 ntBASIC22.53■■□□□ 1.2
CACNA1FO60840 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC22.53■■□□□ 1.2
CACNA1FO60840 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CACNA1FO60840 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1FO60840 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
CACNA1FO60840 RNA5SP419-201ENST00000515908 135 ntBASIC22.53■■□□□ 1.2
CACNA1FO60840 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1FO60840 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1FO60840 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1FO60840 NME9-203ENST00000383180 2133 ntTSL 2 BASIC22.53■■□□□ 1.2
CACNA1FO60840 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1FO60840 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
CACNA1FO60840 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1FO60840 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1FO60840 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1FO60840 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1FO60840 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1FO60840 FAM220CP-201ENST00000395253 831 ntBASIC22.52■■□□□ 1.2
CACNA1FO60840 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC22.52■■□□□ 1.2
CACNA1FO60840 FAAHP1-202ENST00000446499 1238 ntBASIC22.52■■□□□ 1.2
CACNA1FO60840 RBSN-204ENST00000449050 903 ntTSL 2 BASIC22.52■■□□□ 1.2
CACNA1FO60840 PON3-205ENST00000451904 1053 ntTSL 3 BASIC22.52■■□□□ 1.2
CACNA1FO60840 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1FO60840 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC22.52■■□□□ 1.2
CACNA1FO60840 AL355877.3-201ENST00000622820 899 ntBASIC22.52■■□□□ 1.2
CACNA1FO60840 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1FO60840 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1FO60840 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1FO60840 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1FO60840 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms