Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP2AO43633 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CHMP2AO43633 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.24■□□□□ 0.83
CHMP2AO43633 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.24■□□□□ 0.83
CHMP2AO43633 AC012615.1-201ENST00000565797 1299 ntBASIC20.24■□□□□ 0.83
CHMP2AO43633 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.24■□□□□ 0.83
CHMP2AO43633 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP2AO43633 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP2AO43633 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP2AO43633 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.24■□□□□ 0.83
CHMP2AO43633 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.24■□□□□ 0.83
CHMP2AO43633 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP2AO43633 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP2AO43633 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP2AO43633 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP2AO43633 NEFHP1-201ENST00000412845 2629 ntBASIC20.23■□□□□ 0.83
CHMP2AO43633 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CHMP2AO43633 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.23■□□□□ 0.83
CHMP2AO43633 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP2AO43633 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP2AO43633 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP2AO43633 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP2AO43633 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP2AO43633 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CHMP2AO43633 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 FOSL1P1-201ENST00000511041 816 ntBASIC20.23■□□□□ 0.83
CHMP2AO43633 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.23■□□□□ 0.83
CHMP2AO43633 AC099336.1-202ENST00000602961 463 ntBASIC20.23■□□□□ 0.83
CHMP2AO43633 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.23■□□□□ 0.83
CHMP2AO43633 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP2AO43633 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.23■□□□□ 0.83
CHMP2AO43633 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP2AO43633 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP2AO43633 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP2AO43633 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.23■□□□□ 0.83
CHMP2AO43633 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP2AO43633 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP2AO43633 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.22■□□□□ 0.83
CHMP2AO43633 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP2AO43633 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP2AO43633 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP2AO43633 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CHMP2AO43633 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP2AO43633 NSUN5P1-202ENST00000421140 1535 ntBASIC20.22■□□□□ 0.83
CHMP2AO43633 NSUN5P2-203ENST00000457352 1529 ntBASIC20.22■□□□□ 0.83
CHMP2AO43633 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP2AO43633 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP2AO43633 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CHMP2AO43633 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP2AO43633 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.21■□□□□ 0.83
CHMP2AO43633 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CHMP2AO43633 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CHMP2AO43633 MINOS1P3-201ENST00000457048 203 ntBASIC20.21■□□□□ 0.83
CHMP2AO43633 AC112698.1-201ENST00000510299 916 ntBASIC20.21■□□□□ 0.83
CHMP2AO43633 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP2AO43633 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.21■□□□□ 0.83
CHMP2AO43633 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
CHMP2AO43633 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP2AO43633 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.21■□□□□ 0.83
CHMP2AO43633 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP2AO43633 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CHMP2AO43633 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.21■□□□□ 0.83
CHMP2AO43633 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CHMP2AO43633 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.83
CHMP2AO43633 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms