Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
HMGB3O15347 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
HMGB3O15347 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB3O15347 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB3O15347 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB3O15347 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 AC008556.1-201ENST00000610908 2040 ntBASIC14.51□□□□□ -0.09
HMGB3O15347 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HMGB3O15347 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
HMGB3O15347 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
HMGB3O15347 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB3O15347 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 AC112777.1-201ENST00000540175 1423 ntBASIC14.5□□□□□ -0.09
HMGB3O15347 AL357033.4-201ENST00000617703 1807 ntBASIC14.5□□□□□ -0.09
HMGB3O15347 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
HMGB3O15347 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
HMGB3O15347 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
HMGB3O15347 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB3O15347 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HMGB3O15347 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
HMGB3O15347 NME6-213ENST00000451657 871 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB3O15347 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB3O15347 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
HMGB3O15347 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB3O15347 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC14.5□□□□□ -0.09
HMGB3O15347 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HMGB3O15347 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB3O15347 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGB3O15347 UBALD1-205ENST00000590891 2641 ntBASIC14.5□□□□□ -0.09
HMGB3O15347 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
HMGB3O15347 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGB3O15347 FLJ13224-201ENST00000313737 1514 ntBASIC14.5□□□□□ -0.09
HMGB3O15347 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB3O15347 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB3O15347 AL139384.1-201ENST00000612143 3047 ntBASIC14.5□□□□□ -0.09
HMGB3O15347 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGB3O15347 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC14.49□□□□□ -0.09
HMGB3O15347 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
HMGB3O15347 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
HMGB3O15347 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGB3O15347 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGB3O15347 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HMGB3O15347 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGB3O15347 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
HMGB3O15347 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms