Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CBX4O00257 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
CBX4O00257 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
CBX4O00257 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CBX4O00257 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
CBX4O00257 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CBX4O00257 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.39■□□□□ 0.53
CBX4O00257 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.39■□□□□ 0.53
CBX4O00257 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.39■□□□□ 0.53
CBX4O00257 AL845331.1-201ENST00000424978 1190 ntBASIC18.39■□□□□ 0.53
CBX4O00257 VENTXP7-201ENST00000475503 772 ntBASIC18.39■□□□□ 0.53
CBX4O00257 UNC93B7-201ENST00000509439 705 ntBASIC18.39■□□□□ 0.53
CBX4O00257 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.39■□□□□ 0.53
CBX4O00257 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.39■□□□□ 0.53
CBX4O00257 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 AC233702.3-201ENST00000578656 1387 ntBASIC18.39■□□□□ 0.53
CBX4O00257 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
CBX4O00257 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CBX4O00257 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CBX4O00257 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.38■□□□□ 0.53
CBX4O00257 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.38■□□□□ 0.53
CBX4O00257 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
CBX4O00257 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.38■□□□□ 0.53
CBX4O00257 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CBX4O00257 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 MTCL1P1-201ENST00000446207 792 ntBASIC18.38■□□□□ 0.53
CBX4O00257 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.38■□□□□ 0.53
CBX4O00257 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.38■□□□□ 0.53
CBX4O00257 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.38■□□□□ 0.53
CBX4O00257 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CBX4O00257 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CBX4O00257 Z69720.1-201ENST00000601483 472 ntBASIC18.38■□□□□ 0.53
CBX4O00257 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.38■□□□□ 0.53
CBX4O00257 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
CBX4O00257 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.38■□□□□ 0.53
CBX4O00257 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CBX4O00257 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.37■□□□□ 0.53
CBX4O00257 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.37■□□□□ 0.53
CBX4O00257 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
CBX4O00257 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CBX4O00257 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.37■□□□□ 0.53
CBX4O00257 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.37■□□□□ 0.53
CBX4O00257 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.37■□□□□ 0.53
CBX4O00257 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.37■□□□□ 0.53
CBX4O00257 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 AC074051.2-201ENST00000565115 352 ntBASIC18.37■□□□□ 0.53
CBX4O00257 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CBX4O00257 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CBX4O00257 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.37■□□□□ 0.53
CBX4O00257 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.37■□□□□ 0.53
CBX4O00257 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CBX4O00257 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms