Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.28■□□□□ 0.68
SNX9Q9Y5X1 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 DUSP5P1-201ENST00000441325 1139 ntBASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 PRELID1P1-202ENST00000567272 903 ntBASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX9Q9Y5X1 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SNX9Q9Y5X1 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.27■□□□□ 0.67
SNX9Q9Y5X1 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.27■□□□□ 0.67
SNX9Q9Y5X1 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.67
SNX9Q9Y5X1 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SNX9Q9Y5X1 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SNX9Q9Y5X1 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SNX9Q9Y5X1 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 IGHV3-47-201ENST00000425060 335 ntBASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 AC112698.1-201ENST00000510299 916 ntBASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SNX9Q9Y5X1 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 NSUN5P1-202ENST00000421140 1535 ntBASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 NSUN5P2-203ENST00000457352 1529 ntBASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
SNX9Q9Y5X1 BICD1-207ENST00000551848 1962 ntBASIC19.24■□□□□ 0.67
SNX9Q9Y5X1 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SNX9Q9Y5X1 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SNX9Q9Y5X1 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms