Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 FAM87A-204ENST00000613235 858 ntBASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 AC112497.1-201ENST00000624824 639 ntBASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 KRT8P7-201ENST00000533003 1432 ntBASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RHBDD3Q9Y3P4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 AC006116.8-202ENST00000587620 1550 ntBASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 AC139713.2-201ENST00000641328 2723 ntBASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 LINC01568-207ENST00000641790 1380 ntBASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
RHBDD3Q9Y3P4 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 OR6D1P-203ENST00000641209 4860 ntBASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 GMCL1P1-201ENST00000463439 1581 ntBASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 SDHAP2-201ENST00000455183 2001 ntBASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RHBDD3Q9Y3P4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RHBDD3Q9Y3P4 UROS-202ENST00000368778 1556 ntTSL 2 BASIC15.79■□□□□ 0.12
RHBDD3Q9Y3P4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RHBDD3Q9Y3P4 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms