Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VSX1Q9NZR4 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VSX1Q9NZR4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.13■□□□□ 0.17
VSX1Q9NZR4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.13■□□□□ 0.17
VSX1Q9NZR4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VSX1Q9NZR4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
VSX1Q9NZR4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.13■□□□□ 0.17
VSX1Q9NZR4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VSX1Q9NZR4 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 AC132938.6-201ENST00000623828 1655 ntBASIC16.12■□□□□ 0.17
VSX1Q9NZR4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 AC145285.6-201ENST00000604632 637 ntBASIC16.12■□□□□ 0.17
VSX1Q9NZR4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
VSX1Q9NZR4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.11■□□□□ 0.17
VSX1Q9NZR4 AL138966.2-201ENST00000621997 464 ntBASIC16.11■□□□□ 0.17
VSX1Q9NZR4 AL157888.1-201ENST00000631930 593 ntBASIC16.11■□□□□ 0.17
VSX1Q9NZR4 AC141257.4-201ENST00000634557 245 ntBASIC16.11■□□□□ 0.17
VSX1Q9NZR4 AC136944.6-201ENST00000634818 245 ntBASIC16.11■□□□□ 0.17
VSX1Q9NZR4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VSX1Q9NZR4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.1■□□□□ 0.17
VSX1Q9NZR4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms