Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 AC004817.3-201ENST00000602957 2129 ntBASIC21.19■□□□□ 0.98
DDX4Q9NQI0 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 MIR940-201ENST00000401276 94 ntBASIC21.18■□□□□ 0.98
DDX4Q9NQI0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 AC145285.3-201ENST00000564603 959 ntBASIC21.18■□□□□ 0.98
DDX4Q9NQI0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 AC098818.2-201ENST00000564925 2320 ntBASIC21.18■□□□□ 0.98
DDX4Q9NQI0 AC104109.2-201ENST00000602919 1418 ntBASIC21.18■□□□□ 0.98
DDX4Q9NQI0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.18■□□□□ 0.98
DDX4Q9NQI0 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 RPP21-221ENST00000428040 594 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 AC122714.2-201ENST00000502787 707 ntBASIC21.17■□□□□ 0.98
DDX4Q9NQI0 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 AC008735.5-201ENST00000623544 497 ntBASIC21.17■□□□□ 0.98
DDX4Q9NQI0 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 AC107918.4-202ENST00000641623 219 ntBASIC21.17■□□□□ 0.98
DDX4Q9NQI0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 AP002414.3-201ENST00000589352 1468 ntBASIC21.17■□□□□ 0.98
DDX4Q9NQI0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 HLA-J-201ENST00000462773 1622 ntBASIC21.17■□□□□ 0.98
DDX4Q9NQI0 AC079776.2-201ENST00000641154 1609 ntBASIC21.17■□□□□ 0.98
DDX4Q9NQI0 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 AC093677.2-201ENST00000600169 1863 ntBASIC21.17■□□□□ 0.98
DDX4Q9NQI0 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX4Q9NQI0 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 FABP5-202ENST00000396359 986 ntTSL 5 BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 AC034105.1-201ENST00000563488 319 ntBASIC21.16■□□□□ 0.98
DDX4Q9NQI0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 AC117500.6-201ENST00000624871 588 ntBASIC21.16■□□□□ 0.98
DDX4Q9NQI0 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 AC093503.3-201ENST00000624917 2352 ntBASIC21.16■□□□□ 0.98
DDX4Q9NQI0 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.16■□□□□ 0.98
DDX4Q9NQI0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.15■□□□□ 0.98
DDX4Q9NQI0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms