Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 FAM8A6P-201ENST00000407496 1135 ntBASIC17.25■□□□□ 0.35
BRF2Q9HAW0 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 AC139887.4-201ENST00000607877 719 ntBASIC17.25■□□□□ 0.35
BRF2Q9HAW0 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.25■□□□□ 0.35
BRF2Q9HAW0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
BRF2Q9HAW0 AC090340.1-201ENST00000620778 4980 ntBASIC17.25■□□□□ 0.35
BRF2Q9HAW0 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 SPDYE15P-201ENST00000424157 909 ntBASIC17.24■□□□□ 0.35
BRF2Q9HAW0 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 AC116407.2-201ENST00000613639 860 ntBASIC17.24■□□□□ 0.35
BRF2Q9HAW0 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 AC100803.2-201ENST00000562459 1963 ntBASIC17.24■□□□□ 0.35
BRF2Q9HAW0 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
BRF2Q9HAW0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 AC005521.1-201ENST00000393351 872 ntBASIC17.23■□□□□ 0.35
BRF2Q9HAW0 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 AC117947.1-201ENST00000427448 529 ntBASIC17.23■□□□□ 0.35
BRF2Q9HAW0 KRT18P48-201ENST00000434763 852 ntBASIC17.23■□□□□ 0.35
BRF2Q9HAW0 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms