Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 AC243591.1-201ENST00000452967 1364 ntBASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PAAF1Q9BRP4 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 AC104581.1-202ENST00000635932 2618 ntBASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 AC021087.4-201ENST00000563761 564 ntBASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PAAF1Q9BRP4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 FAM215A-202ENST00000632077 792 ntBASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 AF228730.7-201ENST00000641842 219 ntBASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PAAF1Q9BRP4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.14■□□□□ 0.66
PAAF1Q9BRP4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PAAF1Q9BRP4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.14■□□□□ 0.66
PAAF1Q9BRP4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
PAAF1Q9BRP4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PAAF1Q9BRP4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms