Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
USB1Q9BQ65 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
USB1Q9BQ65 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USB1Q9BQ65 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 AL845331.1-201ENST00000424978 1190 ntBASIC16.11■□□□□ 0.17
USB1Q9BQ65 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 AC024563.2-201ENST00000603282 481 ntBASIC16.11■□□□□ 0.17
USB1Q9BQ65 AC079602.3-201ENST00000623931 403 ntBASIC16.11■□□□□ 0.17
USB1Q9BQ65 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
USB1Q9BQ65 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
USB1Q9BQ65 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USB1Q9BQ65 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
USB1Q9BQ65 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USB1Q9BQ65 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
USB1Q9BQ65 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
USB1Q9BQ65 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 MTMR9LP-203ENST00000426597 1545 ntBASIC16.1■□□□□ 0.17
USB1Q9BQ65 AL163051.1-201ENST00000569214 1512 ntBASIC16.1■□□□□ 0.17
USB1Q9BQ65 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 AC090616.6-201ENST00000582640 721 ntBASIC16.1■□□□□ 0.17
USB1Q9BQ65 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
USB1Q9BQ65 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 KRT8P50-201ENST00000562022 1438 ntBASIC16.1■□□□□ 0.17
USB1Q9BQ65 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.1■□□□□ 0.17
USB1Q9BQ65 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.09■□□□□ 0.17
USB1Q9BQ65 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
USB1Q9BQ65 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
USB1Q9BQ65 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
USB1Q9BQ65 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.09■□□□□ 0.17
USB1Q9BQ65 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 AL161938.1-201ENST00000569833 2180 ntBASIC16.09■□□□□ 0.17
USB1Q9BQ65 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 LST1-206ENST00000376090 689 ntTSL 2 BASIC16.09■□□□□ 0.17
USB1Q9BQ65 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 LST1-209ENST00000376096 565 ntTSL 2 BASIC16.09■□□□□ 0.17
USB1Q9BQ65 LST1-210ENST00000376099 610 ntTSL 2 BASIC16.09■□□□□ 0.17
USB1Q9BQ65 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 LST1-214ENST00000418507 726 ntTSL 2 BASIC16.09■□□□□ 0.17
USB1Q9BQ65 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
USB1Q9BQ65 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.09■□□□□ 0.17
USB1Q9BQ65 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms