Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MIR4767-201ENST00000582827 78 ntBASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 AC233992.3-201ENST00000607491 485 ntBASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 AL355001.2-201ENST00000620617 1191 ntBASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.11
CLRN3Q8NCR9 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 NAA20-201ENST00000310450 920 ntTSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 AL358852.1-201ENST00000623174 1268 ntBASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 MYC-208ENST00000641036 567 ntBASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 AL009178.2-201ENST00000597278 2719 ntBASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLRN3Q8NCR9 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 AC138907.5-202ENST00000569484 235 ntBASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 AL138688.1-201ENST00000624851 1594 ntBASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
CLRN3Q8NCR9 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms