Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AP005901.3-202ENST00000581653 237 ntBASIC16.74■□□□□ 0.27
BEST3Q8N1M1 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
BEST3Q8N1M1 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 AL138781.2-201ENST00000617896 1843 ntBASIC16.73■□□□□ 0.27
BEST3Q8N1M1 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 IGHV3-47-201ENST00000425060 335 ntBASIC16.73■□□□□ 0.27
BEST3Q8N1M1 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 LINC01711-201ENST00000598340 967 ntBASIC16.73■□□□□ 0.27
BEST3Q8N1M1 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 NSUN5P1-202ENST00000421140 1535 ntBASIC16.73■□□□□ 0.27
BEST3Q8N1M1 NSUN5P2-203ENST00000457352 1529 ntBASIC16.73■□□□□ 0.27
BEST3Q8N1M1 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BEST3Q8N1M1 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 LTB4R2-202ENST00000528054 3092 ntBASIC16.72■□□□□ 0.27
BEST3Q8N1M1 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 TSPY12P-201ENST00000421279 868 ntBASIC16.72■□□□□ 0.27
BEST3Q8N1M1 AC246785.2-201ENST00000432512 513 ntBASIC16.72■□□□□ 0.27
BEST3Q8N1M1 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.72■□□□□ 0.27
BEST3Q8N1M1 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BEST3Q8N1M1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.71■□□□□ 0.27
BEST3Q8N1M1 FAAHP1-202ENST00000446499 1238 ntBASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms