Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VRK3Q8IV63 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VRK3Q8IV63 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VRK3Q8IV63 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VRK3Q8IV63 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VRK3Q8IV63 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VRK3Q8IV63 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VRK3Q8IV63 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VRK3Q8IV63 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 KRT8P26-201ENST00000534154 1276 ntBASIC17.62■□□□□ 0.41
VRK3Q8IV63 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 AC009154.2-201ENST00000621177 724 ntBASIC17.62■□□□□ 0.41
VRK3Q8IV63 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VRK3Q8IV63 AP000550.4-202ENST00000639755 178 ntBASIC17.62■□□□□ 0.41
VRK3Q8IV63 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 AC016734.2-201ENST00000624325 1377 ntBASIC17.62■□□□□ 0.41
VRK3Q8IV63 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VRK3Q8IV63 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.62■□□□□ 0.41
VRK3Q8IV63 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.61■□□□□ 0.41
VRK3Q8IV63 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.61■□□□□ 0.41
VRK3Q8IV63 AC068472.1-201ENST00000474589 881 ntBASIC17.61■□□□□ 0.41
VRK3Q8IV63 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.61■□□□□ 0.41
VRK3Q8IV63 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.61■□□□□ 0.41
VRK3Q8IV63 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.61■□□□□ 0.41
VRK3Q8IV63 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VRK3Q8IV63 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 KRT8P47-201ENST00000604727 1398 ntBASIC17.6■□□□□ 0.41
VRK3Q8IV63 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 KRT18P55-202ENST00000578578 1546 ntBASIC17.6■□□□□ 0.41
VRK3Q8IV63 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.6■□□□□ 0.41
VRK3Q8IV63 AC012317.2-201ENST00000623305 2251 ntBASIC17.6■□□□□ 0.41
VRK3Q8IV63 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VRK3Q8IV63 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.59■□□□□ 0.41
VRK3Q8IV63 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VRK3Q8IV63 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms