Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 GREM1-201ENST00000560677 623 ntTSL 4 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC88AQ3V6T2 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 AC007967.3-201ENST00000434308 558 ntBASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 SIGLEC16-201ENST00000599858 1437 ntBASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC88AQ3V6T2 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 ESPNP-201ENST00000270691 2015 ntBASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 HCG4B-203ENST00000450128 991 ntBASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 LINC01126-201ENST00000623515 1646 ntBASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC88AQ3V6T2 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 KLF4P1-201ENST00000412782 1185 ntBASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 ELK2BP-201ENST00000415014 1224 ntBASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 AC005498.2-205ENST00000593218 784 ntBASIC21.9■■□□□ 1.1
CCDC88AQ3V6T2 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CCDC88AQ3V6T2 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CCDC88AQ3V6T2 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.89■■□□□ 1.1
CCDC88AQ3V6T2 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 WBP2-203ENST00000433525 928 ntTSL 2 BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
CCDC88AQ3V6T2 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 AC093028.1-201ENST00000622998 982 ntBASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms