Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.62■□□□□ 0.57
COPAP53621 UNC93B7-201ENST00000509439 705 ntBASIC18.62■□□□□ 0.57
COPAP53621 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.62■□□□□ 0.57
COPAP53621 RN7SL510P-201ENST00000581311 263 ntBASIC18.62■□□□□ 0.57
COPAP53621 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.62■□□□□ 0.57
COPAP53621 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.62■□□□□ 0.57
COPAP53621 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
COPAP53621 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 MTMR9LP-203ENST00000426597 1545 ntBASIC18.62■□□□□ 0.57
COPAP53621 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
COPAP53621 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COPAP53621 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
COPAP53621 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.61■□□□□ 0.57
COPAP53621 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.61■□□□□ 0.57
COPAP53621 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COPAP53621 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.61■□□□□ 0.57
COPAP53621 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.61■□□□□ 0.57
COPAP53621 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.61■□□□□ 0.57
COPAP53621 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 KRT8P50-201ENST00000562022 1438 ntBASIC18.61■□□□□ 0.57
COPAP53621 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 LINC00265-3P-201ENST00000447588 903 ntBASIC18.61■□□□□ 0.57
COPAP53621 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.61■□□□□ 0.57
COPAP53621 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.61■□□□□ 0.57
COPAP53621 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.61■□□□□ 0.57
COPAP53621 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.61■□□□□ 0.57
COPAP53621 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.61■□□□□ 0.57
COPAP53621 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.61■□□□□ 0.57
COPAP53621 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COPAP53621 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.61■□□□□ 0.57
COPAP53621 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COPAP53621 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COPAP53621 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
COPAP53621 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.61■□□□□ 0.57
COPAP53621 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.6■□□□□ 0.57
COPAP53621 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.6■□□□□ 0.57
COPAP53621 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.6■□□□□ 0.57
COPAP53621 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.6■□□□□ 0.57
COPAP53621 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 TOB2P1-201ENST00000469761 992 ntBASIC18.6■□□□□ 0.57
COPAP53621 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.6■□□□□ 0.57
COPAP53621 AP000867.3-201ENST00000524675 377 ntBASIC18.6■□□□□ 0.57
COPAP53621 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.6■□□□□ 0.57
COPAP53621 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.6■□□□□ 0.57
COPAP53621 AC111152.3-201ENST00000569699 673 ntBASIC18.6■□□□□ 0.57
COPAP53621 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.6■□□□□ 0.57
COPAP53621 GPR32P1-201ENST00000601788 811 ntBASIC18.6■□□□□ 0.57
COPAP53621 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COPAP53621 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
COPAP53621 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COPAP53621 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COPAP53621 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.6■□□□□ 0.57
COPAP53621 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.6■□□□□ 0.57
COPAP53621 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COPAP53621 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
COPAP53621 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COPAP53621 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.59■□□□□ 0.57
COPAP53621 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COPAP53621 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COPAP53621 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COPAP53621 IGHGP-201ENST00000390555 1178 ntBASIC18.59■□□□□ 0.57
COPAP53621 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.59■□□□□ 0.57
COPAP53621 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.59■□□□□ 0.57
COPAP53621 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COPAP53621 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.59■□□□□ 0.57
COPAP53621 AC090616.6-201ENST00000582640 721 ntBASIC18.59■□□□□ 0.57
COPAP53621 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms