Protein–RNA interactions for Protein: P48729

CSNK1A1, Casein kinase I isoform alpha, humanhuman

Predictions only

Length 337 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1A1P48729 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CSNK1A1P48729 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CSNK1A1P48729 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSNK1A1P48729 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSNK1A1P48729 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSNK1A1P48729 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CSNK1A1P48729 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.07■□□□□ 0.16
CSNK1A1P48729 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSNK1A1P48729 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.07■□□□□ 0.16
CSNK1A1P48729 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.07■□□□□ 0.16
CSNK1A1P48729 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CSNK1A1P48729 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.07■□□□□ 0.16
CSNK1A1P48729 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSNK1A1P48729 KRT89P-201ENST00000620027 1478 ntBASIC16.07■□□□□ 0.16
CSNK1A1P48729 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CSNK1A1P48729 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.07■□□□□ 0.16
CSNK1A1P48729 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSNK1A1P48729 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.07■□□□□ 0.16
CSNK1A1P48729 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CSNK1A1P48729 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSNK1A1P48729 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.07■□□□□ 0.16
CSNK1A1P48729 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 AC113404.2-201ENST00000507884 177 ntBASIC16.06■□□□□ 0.16
CSNK1A1P48729 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 ZNF444P1-201ENST00000559497 298 ntBASIC16.06■□□□□ 0.16
CSNK1A1P48729 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
CSNK1A1P48729 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSNK1A1P48729 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 LINC01311-201ENST00000565162 1445 ntBASIC16.05■□□□□ 0.16
CSNK1A1P48729 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 HBZP1-201ENST00000354915 429 ntBASIC16.05■□□□□ 0.16
CSNK1A1P48729 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CSNK1A1P48729 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.05■□□□□ 0.16
CSNK1A1P48729 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.04■□□□□ 0.16
CSNK1A1P48729 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CSNK1A1P48729 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms