Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.98■□□□□ 0.31
RFX3P48380 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RFX3P48380 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RFX3P48380 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RFX3P48380 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RFX3P48380 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RFX3P48380 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
RFX3P48380 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
RFX3P48380 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RFX3P48380 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.97■□□□□ 0.31
RFX3P48380 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RFX3P48380 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.97■□□□□ 0.31
RFX3P48380 REXO1L9P-201ENST00000604264 2108 ntBASIC16.97■□□□□ 0.31
RFX3P48380 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RFX3P48380 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.97■□□□□ 0.31
RFX3P48380 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RFX3P48380 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
RFX3P48380 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
RFX3P48380 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.97■□□□□ 0.31
RFX3P48380 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RFX3P48380 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RFX3P48380 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.97■□□□□ 0.31
RFX3P48380 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RFX3P48380 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
RFX3P48380 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
RFX3P48380 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.97■□□□□ 0.31
RFX3P48380 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.97■□□□□ 0.31
RFX3P48380 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.97■□□□□ 0.31
RFX3P48380 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
RFX3P48380 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.97■□□□□ 0.31
RFX3P48380 AL157888.1-201ENST00000631930 593 ntBASIC16.97■□□□□ 0.31
RFX3P48380 ABALON-201ENST00000629058 1903 ntBASIC16.97■□□□□ 0.31
RFX3P48380 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RFX3P48380 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.97■□□□□ 0.31
RFX3P48380 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
RFX3P48380 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RFX3P48380 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RFX3P48380 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RFX3P48380 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
RFX3P48380 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
RFX3P48380 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.96■□□□□ 0.31
RFX3P48380 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
RFX3P48380 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RFX3P48380 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
RFX3P48380 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RFX3P48380 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.96■□□□□ 0.31
RFX3P48380 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.96■□□□□ 0.31
RFX3P48380 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RFX3P48380 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.96■□□□□ 0.31
RFX3P48380 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
RFX3P48380 BX664615.1-201ENST00000443558 458 ntBASIC16.96■□□□□ 0.31
RFX3P48380 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.96■□□□□ 0.31
RFX3P48380 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.96■□□□□ 0.31
RFX3P48380 YBX1P2-201ENST00000489612 999 ntBASIC16.96■□□□□ 0.31
RFX3P48380 KRT18P21-201ENST00000515767 1272 ntBASIC16.96■□□□□ 0.31
RFX3P48380 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.96■□□□□ 0.31
RFX3P48380 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.96■□□□□ 0.31
RFX3P48380 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.96■□□□□ 0.31
RFX3P48380 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.96■□□□□ 0.31
RFX3P48380 AL441883.1-201ENST00000566170 1045 ntBASIC16.96■□□□□ 0.31
RFX3P48380 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RFX3P48380 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
RFX3P48380 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
RFX3P48380 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
RFX3P48380 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RFX3P48380 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.96■□□□□ 0.31
RFX3P48380 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.96■□□□□ 0.31
RFX3P48380 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
RFX3P48380 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RFX3P48380 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
RFX3P48380 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RFX3P48380 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.96■□□□□ 0.3
RFX3P48380 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.96■□□□□ 0.3
RFX3P48380 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
RFX3P48380 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RFX3P48380 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RFX3P48380 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.3
RFX3P48380 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RFX3P48380 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.3
RFX3P48380 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
RFX3P48380 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.95■□□□□ 0.3
RFX3P48380 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.95■□□□□ 0.3
RFX3P48380 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.95■□□□□ 0.3
RFX3P48380 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
RFX3P48380 AC117947.1-201ENST00000427448 529 ntBASIC16.95■□□□□ 0.3
RFX3P48380 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.95■□□□□ 0.3
RFX3P48380 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.95■□□□□ 0.3
RFX3P48380 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
RFX3P48380 RN7SL850P-201ENST00000579959 291 ntBASIC16.95■□□□□ 0.3
RFX3P48380 MIR3917-201ENST00000580971 93 ntBASIC16.95■□□□□ 0.3
RFX3P48380 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms