Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.7■□□□□ 0.1
COL8A1P27658 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC15.7■□□□□ 0.1
COL8A1P27658 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.7■□□□□ 0.1
COL8A1P27658 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 AL139400.1-201ENST00000366220 510 ntBASIC15.7■□□□□ 0.1
COL8A1P27658 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.7■□□□□ 0.1
COL8A1P27658 TSEN15P1-201ENST00000423257 515 ntBASIC15.7■□□□□ 0.1
COL8A1P27658 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.7■□□□□ 0.1
COL8A1P27658 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.7■□□□□ 0.1
COL8A1P27658 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.7■□□□□ 0.1
COL8A1P27658 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 AC002310.6-201ENST00000624451 1377 ntBASIC15.7■□□□□ 0.1
COL8A1P27658 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 ELL2P1-201ENST00000413990 1906 ntBASIC15.7■□□□□ 0.1
COL8A1P27658 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
COL8A1P27658 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL8A1P27658 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 AC125634.1-201ENST00000438758 1403 ntBASIC15.69■□□□□ 0.1
COL8A1P27658 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC15.69■□□□□ 0.1
COL8A1P27658 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.69■□□□□ 0.1
COL8A1P27658 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.69■□□□□ 0.1
COL8A1P27658 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
COL8A1P27658 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.69■□□□□ 0.1
COL8A1P27658 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.69■□□□□ 0.1
COL8A1P27658 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.69■□□□□ 0.1
COL8A1P27658 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.69■□□□□ 0.1
COL8A1P27658 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.69■□□□□ 0.1
COL8A1P27658 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.69■□□□□ 0.1
COL8A1P27658 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.69■□□□□ 0.1
COL8A1P27658 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.69■□□□□ 0.1
COL8A1P27658 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 AC004449.1-201ENST00000564240 433 ntBASIC15.69■□□□□ 0.1
COL8A1P27658 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.69■□□□□ 0.1
COL8A1P27658 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.69■□□□□ 0.1
COL8A1P27658 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.69■□□□□ 0.1
COL8A1P27658 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.69■□□□□ 0.1
COL8A1P27658 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.69■□□□□ 0.1
COL8A1P27658 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC15.69■□□□□ 0.1
COL8A1P27658 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC15.69■□□□□ 0.1
COL8A1P27658 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
COL8A1P27658 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL8A1P27658 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.68■□□□□ 0.1
COL8A1P27658 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
COL8A1P27658 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC15.68■□□□□ 0.1
COL8A1P27658 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
COL8A1P27658 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC15.68■□□□□ 0.1
COL8A1P27658 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15.68■□□□□ 0.1
COL8A1P27658 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.68■□□□□ 0.1
COL8A1P27658 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL8A1P27658 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.68■□□□□ 0.1
COL8A1P27658 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.68■□□□□ 0.1
COL8A1P27658 MTCL1P1-201ENST00000446207 792 ntBASIC15.68■□□□□ 0.1
COL8A1P27658 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.68■□□□□ 0.1
COL8A1P27658 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.68■□□□□ 0.1
COL8A1P27658 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.68■□□□□ 0.1
COL8A1P27658 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL8A1P27658 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
COL8A1P27658 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC15.68■□□□□ 0.1
COL8A1P27658 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL8A1P27658 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.68■□□□□ 0.1
COL8A1P27658 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms